View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2903R-Insertion-1 (Length: 1015)
Name: NF2903R-Insertion-1
Description: NF2903R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903R-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 2e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 711 - 846
Target Start/End: Complemental strand, 10771500 - 10771364
Alignment:
| Q |
711 |
aattgcaatagtttattgacataaaagtacttatttgtaattttgtatggtctagttaaatttacaaatacaatttgcaagtaactgttaataaaatgtg |
810 |
Q |
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| T |
10771500 |
aattgcaataatttattgacataaaagtacttatttgtaattttgtatggtctagttaaatttacaaatacaatttgcaagtaactgttaataaaatgtg |
10771401 |
T |
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| Q |
811 |
gcggc-atttaactcatgagttgaacgaattcacaca |
846 |
Q |
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| T |
10771400 |
gcggcaatttaactcatgagttgaacaaattcacaca |
10771364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 530 - 594
Target Start/End: Complemental strand, 10771687 - 10771626
Alignment:
| Q |
530 |
atatacccatagtaaaatccaacagaacacaaccgcacaagttgatcaacctaatctaaccgtat |
594 |
Q |
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| T |
10771687 |
atatacccatagtaaaatccaa---aacacaaccgcacaagttgatcaacctaatctaaccgtat |
10771626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 294 - 452
Target Start/End: Complemental strand, 10771930 - 10771767
Alignment:
| Q |
294 |
acaaacttaaatgtgaagtttattatgaaataagtcaatgaagttgctcataatcttactataacaactacatcatctaataatagttttggtttattca |
393 |
Q |
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| T |
10771930 |
acaaacgtaaaggtaaaatttattatgagacaaaccaataaaattgttcataatcttactagggcgactacatcatcttatgatagttttcgtttattca |
10771831 |
T |
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| Q |
394 |
ttaaaatat----ctgattgtatccataacattattac-gaataaaatgagttactttcctttt |
452 |
Q |
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| T |
10771830 |
tttaaataaataactaattgtatccaaaacattattattgaataaaatgagttactttcctttt |
10771767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 7298221 - 7298192
Alignment:
| Q |
24 |
aaaattataaggtcggatgtcgtgacccag |
53 |
Q |
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| T |
7298221 |
aaaattataaggtcggatgtcgtgacccag |
7298192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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