View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2903R-Insertion-3 (Length: 583)
Name: NF2903R-Insertion-3
Description: NF2903R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903R-Insertion-3 |
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| [»] chr4 (6 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 286 - 583
Target Start/End: Original strand, 7558832 - 7559129
Alignment:
| Q |
286 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttaccacttaccatcgtttgaggttcgaaaatatggtatttagt |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7558832 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttaccacttaccatcgtttgaggttcgaaaatatggtatttagt |
7558931 |
T |
|
| Q |
386 |
attgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagacctcttggtcatggaagctgt |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7558932 |
attgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagacctcttggtcatggaggctgt |
7559031 |
T |
|
| Q |
486 |
gatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgacttcggcacgtttattaactt |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7559032 |
gatataattccgtgaaataccttgattatattttccatcatcggtccttgttttgaattcaaaaaccagagctttgacttcggcacatttattaactt |
7559129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 366 - 583
Target Start/End: Original strand, 7562668 - 7562885
Alignment:
| Q |
366 |
tcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
465 |
Q |
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| T |
7562668 |
tcgaaaatatggtatttagtattgacactttttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
7562767 |
T |
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| Q |
466 |
ctcttggtcatggaagctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgactt |
565 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
7562768 |
ctcttggtcatggaggctgtgatataattccgtgaaataccttgattatattttccatcatctgtccttgttttgaattcaaaaaccagagctttgattt |
7562867 |
T |
|
| Q |
566 |
cggcacgtttattaactt |
583 |
Q |
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|||||| ||||||||||| |
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| T |
7562868 |
cggcacttttattaactt |
7562885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 7558563 - 7558798
Alignment:
| Q |
9 |
ctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnnntcgatgtgtaatgttaggttagctatctaat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
7558563 |
ctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaattgatgtgtaatgttaggtcagctatctaat |
7558662 |
T |
|
| Q |
109 |
tatgataaaacatttacaggaaactaatataacaaattacaaccaaatattctattttatcatgatgtgtactagtttcgtgaaaataagatctcttaaa |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7558663 |
tataataaaacatttacaggaaactaatataacaaattacaaccaaatattctattctatcatgatgtgtactagttttgtgaaaataagatctcttaaa |
7558762 |
T |
|
| Q |
209 |
tcacctttagattgaaatatatatgcattccatgaa |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7558763 |
tcacctttagattgaaatatatatgcattccatgaa |
7558798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 372 - 495
Target Start/End: Original strand, 7594033 - 7594157
Alignment:
| Q |
372 |
atatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttg-attaatgaactagggtttagacctctt |
470 |
Q |
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|||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||| |
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| T |
7594033 |
atatagtatttagtattgagactctttcgcttggctcattgaggatgaacaacaccaaagtttattaacttgcattaatgaactggggcttagaccactt |
7594132 |
T |
|
| Q |
471 |
ggtcatggaagctgtgatataattc |
495 |
Q |
| |
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|||||||| |||| |||||||||| |
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| T |
7594133 |
cgtcatggaggctgagatataattc |
7594157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 7593812 - 7593885
Alignment:
| Q |
171 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
244 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
7593812 |
tgatgtgtactagtttagtgaaaataagatctcttagatcacctttagattgcaatagatatgcattccatgaa |
7593885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 7593899 - 7593959
Alignment:
| Q |
286 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttacc |
346 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| |
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|
| T |
7593899 |
taccagatctctttgagctcagaaaatcaagaatccttgctgcatatttctcctggttacc |
7593959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 366 - 583
Target Start/End: Complemental strand, 8993040 - 8992823
Alignment:
| Q |
366 |
tcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
465 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8993040 |
tcgaaaatatggtatttagtattgacactttttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
8992941 |
T |
|
| Q |
466 |
ctcttggtcatggaagctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgactt |
565 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8992940 |
ctcttggtcatggaggctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgaatt |
8992841 |
T |
|
| Q |
566 |
cggcacgtttattaactt |
583 |
Q |
| |
|
|||||||||||||||||| |
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| T |
8992840 |
cggcacgtttattaactt |
8992823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 8993416 - 8993162
Alignment:
| Q |
9 |
ctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnnntcgatgtgtaatgttaggttagctatctaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |
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| T |
8993416 |
ctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaatcaatgtgtaatgttaggtcagctatctaat |
8993317 |
T |
|
| Q |
109 |
tatgataaaacatt-------------------tacaggaaactaatataacaaattacaaccaaatattctattttatcatgatgtgtactagtttcgt |
189 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |
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| T |
8993316 |
tatgataaaacattccttcaaaaaaaaaacatttacaggaaactaatataacaaattacgaccaaatattctattctatcatgatgtgtactagttttgt |
8993217 |
T |
|
| Q |
190 |
gaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8993216 |
gaaaataagatctcttaaatcacctttagattgaaatatacatgcattccatgaa |
8993162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 372 - 495
Target Start/End: Complemental strand, 8968034 - 8967910
Alignment:
| Q |
372 |
atatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttg-attaatgaactagggtttagacctctt |
470 |
Q |
| |
|
|||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||| |
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| T |
8968034 |
atatagtatttagcattgacactctttcgcttggctcattgaggatgaacaacaccaaagtttattaacttgcattaatgaactagggcttagaacactt |
8967935 |
T |
|
| Q |
471 |
ggtcatggaagctgtgatataattc |
495 |
Q |
| |
|
|||||||| |||| |||||||||| |
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|
| T |
8967934 |
cgtcatggaggctgagatataattc |
8967910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 8993150 - 8993070
Alignment:
| Q |
286 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttaccacttaccatcgtttgaggtt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8993150 |
taccagatctcttagagctcagaaaatcaataatcctttctgcatatttctcctggttaccacttaccatcgtttgaggtt |
8993070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 8968255 - 8968182
Alignment:
| Q |
171 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
244 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
8968255 |
tgatgtgtactagtttagtgaaaataagatctcttaaatcacctttagattgcaatagatatgcattccatgaa |
8968182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 8968168 - 8968108
Alignment:
| Q |
286 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttacc |
346 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
8968168 |
taccagatctctttgagctcagaaaatcaagaatccttgctgcatatttctcctggttacc |
8968108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 30742892 - 30742759
Alignment:
| Q |
369 |
aaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaa-cttgattaat------gaactagggttt |
461 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| || |||||| |||||||||||| |
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| T |
30742892 |
aaaatatcgtatttagtattgacactctttcgcttagctcgttgaggatgaacaacaccaaagttcattaatctgcattaatgaactagaactagggttt |
30742793 |
T |
|
| Q |
462 |
agacctcttggtcatggaagctgtgatataattc |
495 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |
|
|
| T |
30742792 |
agaccacttggtcatggaggctgtgatataattc |
30742759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 30743012 - 30742968
Alignment:
| Q |
293 |
tctcttagagctcagaaaatcaataatccgttctgcatatttctc |
337 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||| |||||||| |
|
|
| T |
30743012 |
tctcttagagctcagaaaatcaagaatccttgctgcgtatttctc |
30742968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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