View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2904_high_10 (Length: 237)

Name: NF2904_high_10
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2904_high_10
NF2904_high_10
[»] chr5 (2 HSPs)
chr5 (1-223)||(9606271-9606493)
chr5 (1-177)||(9590625-9590799)
[»] chr8 (15 HSPs)
chr8 (1-223)||(6455990-6456212)
chr8 (1-223)||(6449523-6449745)
chr8 (2-94)||(6262205-6262297)
chr8 (1-88)||(7457950-7458037)
chr8 (1-88)||(7470352-7470439)
chr8 (6-87)||(6273421-6273502)
chr8 (8-88)||(6351209-6351289)
chr8 (6-88)||(6287671-6287753)
chr8 (6-72)||(6362110-6362176)
chr8 (6-87)||(6330762-6330843)
chr8 (6-87)||(6368870-6368951)
chr8 (6-57)||(6389882-6389933)
chr8 (8-87)||(6423127-6423206)
chr8 (6-87)||(6320300-6320381)
chr8 (17-60)||(6409128-6409171)
[»] chr2 (2 HSPs)
chr2 (5-174)||(42689628-42689797)
chr2 (6-87)||(42692138-42692219)
[»] chr7 (2 HSPs)
chr7 (8-69)||(46709173-46709234)
chr7 (8-62)||(46708215-46708269)
[»] chr1 (1 HSPs)
chr1 (17-69)||(47126861-47126913)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9606271 - 9606493
Alignment:
Q  1 cattatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606271 cattatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaaga 9606370  T
Q  101 tggatcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattacacctaaatatcaaaccttaattg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  9606371 tggatcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattacaccaaaatatcaaaccctaattg 9606470  T
Q  201 atctttctgtgattgagatattg 223  Q
    |||||||||||||||||||||||    
T  9606471 atctttctgtgattgagatattg 9606493  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 9590625 - 9590799
Alignment:
Q  1 cattatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaaga 100  Q
    |||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||  || ||| ||| ||||||||||||| | || ||  ||||    
T  9590625 cattatcatatggactactcctgctcttcatgctgctgttaactttggacaatatcctta--gatgttttatcctaaaccgtccaatagttggtaaaaga 9590722  T
Q  101 tggatcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattac 177  Q
    ||||| || |||||||||||||   | ||||| || ||||||||||| || |||||| |||||||||||||||||||    
T  9590723 tggataccagagaaaggaactcttgaatatgaagaaatggtgaaaaatccccaaaagccatatttgagaacaattac 9590799  T

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Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6456212 - 6455990
Alignment:
Q  1 cattatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaaga 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||| |||||| |||||    
T  6456212 cattatcatatggactgcttcagctcttcatgcagcagttaactttggacagtatccttatggaggatatatcctgaaccgtccaactcttagtagaaga 6456113  T
Q  101 tggatcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattacacctaaatatcaaaccttaattg 200  Q
    |  || |||||| ||||||||||| | |||||||||||||||||||  ||||||||||| ||||||||||| |||||||| || | ||| ||| | ||||    
T  6456112 tttattccggagcaaggaactccggagtatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaaagtttcagaccctcattg 6456013  T
Q  201 atctttctgtgattgagatattg 223  Q
    |||||||||||||||||||||||    
T  6456012 atctttctgtgattgagatattg 6455990  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6449745 - 6449523
Alignment:
Q  1 cattatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaaga 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||||||| ||||| |||||    
T  6449745 cattattatatggactgcttctgctcttcatgcagctgttaatttcggacaatatccttacggaggatatatcctgaaccgtccaacaattagtagaaga 6449646  T
Q  101 tggatcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattacacctaaatatcaaaccttaattg 200  Q
    |  || ||||||  |||||||||| | || ||||||||||||||||  ||||||||||| ||||||||||| |||||||| || ||||||||| |  |||    
T  6449645 tttattccggagccaggaactccggaatacgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaaagtatcaaacccttgttg 6449546  T
Q  201 atctttctgtgattgagatattg 223  Q
    ||||||||||||| |||||||||    
T  6449545 atctttctgtgatcgagatattg 6449523  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 6262297 - 6262205
Alignment:
Q  2 attatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagt 94  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  ||  ||||||||||||| ||||||    
T  6262297 attatcatatggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagt 6262205  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7458037 - 7457950
Alignment:
Q  1 cattatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaaca 88  Q
    |||| ||||||||| |||||| || |||||||||||||||||||||||||||||| | |||||||| ||||| || ||||| ||||||    
T  7458037 cattctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggaggatatatccttaaccgaccaaca 7457950  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7470439 - 7470352
Alignment:
Q  1 cattatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaaca 88  Q
    |||| ||||||||| |||||| || |||||||||||||||||||||||||||||| | |||||||| ||||| || ||||| ||||||    
T  7470439 cattctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggaggatatatccttaaccgaccaaca 7470352  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 6273502 - 6273421
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaac 87  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| |||||    
T  6273502 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggttacattcttaaccgaccaac 6273421  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 6351289 - 6351209
Alignment:
Q  8 atatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaaca 88  Q
    ||||||| |||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||||    
T  6351289 atatggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggaggatatatccttaaccggccaaca 6351209  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 6287753 - 6287671
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaaca 88  Q
    ||||||||| |||||| || |||||||| ||||||||||||||||||||||| || || ||||| ||||| ||||| ||||||    
T  6287753 tcatatggattgcttcggcacttcatgcggctgttaattttggacaatatccgtacggtggttacattcttaaccgaccaaca 6287671  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 6362176 - 6362110
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatat 72  Q
    ||||||||| |||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||    
T  6362176 tcatatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggaggatatat 6362110  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 6330843 - 6330762
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaac 87  Q
    ||||||||| |||||| || | ||||||||||||||||||||| |||||||| |||||||| ||||| || ||||| |||||    
T  6330843 tcatatggattgcttcagcacatcatgcagctgttaattttggtcaatatccatatggaggatatatacttaaccgaccaac 6330762  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 6368951 - 6368870
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaac 87  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||||||  |||||||| || || || ||||| |||||    
T  6368951 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatcagtatggagggtacatccttaaccgaccaac 6368870  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 6389933 - 6389882
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatcc 57  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||    
T  6389933 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatcc 6389882  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 6423206 - 6423127
Alignment:
Q  8 atatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaac 87  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||| || |||||||| || || || ||||| |||||    
T  6423206 atatggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggaggatacatccttaaccgaccaac 6423127  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 6320381 - 6320300
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaac 87  Q
    ||||||||| |||||| || | ||||||||||||||||||||| ||||| || |||||||| ||||| || ||||| |||||    
T  6320381 tcatatggattgcttcagcacatcatgcagctgttaattttggtcaatacccatatggaggatatatacttaaccgaccaac 6320300  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 6409171 - 6409128
Alignment:
Q  17 gcttctgctcttcatgcagctgttaattttggacaatatcctta 60  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  6409171 gcttcagcacttcatgcagctgttaattttggacaatatcctta 6409128  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 42689628 - 42689797
Alignment:
Q  5 atcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaagatgga 104  Q
    ||||||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||  | ||| ||||||       
T  42689628 atcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattac 42689727  T
Q  105 tcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaat 174  Q
    | || ||| |||||||| |  | |||||||| |||||||| |  ||||||||||| || |||||||||||    
T  42689728 ttcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaat 42689797  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 42692219 - 42692138
Alignment:
Q  6 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaac 87  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||| ||| | || |||||||  ||  |||||||||||||    
T  42692219 tcatatggattgcttcagctcttcatgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaac 42692138  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 46709234 - 46709173
Alignment:
Q  8 atatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggtta 69  Q
    ||||||| |||||| ||||| ||||||||||| || |||||||||||||||| || ||||||    
T  46709234 atatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggtta 46709173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 46708269 - 46708215
Alignment:
Q  8 atatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatg 62  Q
    ||||||| |||||| || || ||||||||||| || |||||||||||||||||||    
T  46708269 atatggattgcttcagccctacatgcagctgtaaaatttggacaatatccttatg 46708215  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 47126913 - 47126861
Alignment:
Q  17 gcttctgctcttcatgcagctgttaattttggacaatatccttatggaggtta 69  Q
    ||||||||| ||||||||||||| || ||||||||||| ||||||| ||||||    
T  47126913 gcttctgcttttcatgcagctgtgaactttggacaatacccttatgcaggtta 47126861  T

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