View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2904_high_13 (Length: 226)
Name: NF2904_high_13
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7346683 - 7346473
Alignment:
| Q |
1 |
caagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaacaatcgaaatgagattgttgcnnnnnnnatg |
100 |
Q |
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| T |
7346683 |
caagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaacaatcgaaatgagattgttgctttttttatg |
7346584 |
T |
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| Q |
101 |
cgacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcgaattttttaacgtcacttatctaatacct |
200 |
Q |
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| T |
7346583 |
caacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccggcgaattttttaacgtcacttatctaatacct |
7346484 |
T |
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| Q |
201 |
tcacatctctg |
211 |
Q |
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||||||||||| |
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| T |
7346483 |
tcacatctctg |
7346473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 53400925 - 53401037
Alignment:
| Q |
99 |
tgcgacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcgaattttttaacgtcacttatctaatac |
198 |
Q |
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| T |
53400925 |
tgcgacgacggagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccggcgaattttttaacgtcacttatctaatac |
53401024 |
T |
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| Q |
199 |
cttcacatctctg |
211 |
Q |
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| T |
53401025 |
cttcacatctctg |
53401037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9963051 - 9962960
Alignment:
| Q |
1 |
caagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaacaatcgaaat--gagattgttgc |
90 |
Q |
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| T |
9963051 |
caagattcttcaagttgtagaaatgagattgaaaatcttcaggaagaaattcagaatcggaacgaagaacaatcaaaatcggagattgttgc |
9962960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 9962900 - 9962845
Alignment:
| Q |
116 |
cgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcg |
171 |
Q |
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| T |
9962900 |
cgggaaatgatggccgtctacggcggaatcagtcgatggaggtggtggttccggcg |
9962845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 53400852 - 53400890
Alignment:
| Q |
1 |
caagattcttcaagttgtagaagtgagattgaaaatcat |
39 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
53400852 |
caagattcttcaagttgtagaagtgagattgaaaatcat |
53400890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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