View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2904_high_3 (Length: 461)
Name: NF2904_high_3
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 43951523 - 43951089
Alignment:
| Q |
17 |
actatcaaaaagggaacatcgaggtacacaatttacccacacaatcatggcatacagtgtagtacactatatgaccaaaaagaatttgaagaatttgaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43951523 |
actatcaaaaagggaacatcgaggtacacaatttacccacacaatcatggcatacagcgtagtacactatatgaccaaaaagaatttgaagaatttgaaa |
43951424 |
T |
|
| Q |
117 |
ca--gcattgaagggagtgcctgcaattatttagtacttccatatcagcatgcacatccaccaccaccactttgctcactctctggaacagcctcaggaa |
214 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43951423 |
cacagcattgaagggagtgcctgcaattatttagtacttccatatcagcatgcacatccaccaccaccactttgctcactctctggaacagcctcaggaa |
43951324 |
T |
|
| Q |
215 |
ttccttgaaaatatctgcaattcaaattgaaataatgctttcagaaatcagaaaagcagcaatctacacacagctcaatctgaaaatttagaaggatgca |
314 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
43951323 |
ttccttgaaaatatctgcaattcaaatcgaaataatgctttcagaaatcagaaaagcagcaatctacacacaactcaatcagaaaatttagaaggatgca |
43951224 |
T |
|
| Q |
315 |
tatactaagacttgagttnnnnnnnagaggaagaaaattttagtaaatacatatacaagttgtaagagtgaaaatagtgtcataatgaatatctccttct |
414 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43951223 |
tatactaagacttgagttcccccccagaggaagaaaattttagtaaatacatatacaagttgtaagagtgaaaatagtgtcataatgaatatctccttct |
43951124 |
T |
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| Q |
415 |
aaacctattttattcagaatctcctcaatttgttc |
449 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43951123 |
aaacctattttattcagaatctcctcaatttgttc |
43951089 |
T |
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