View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2904_high_9 (Length: 259)
Name: NF2904_high_9
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 27756347 - 27756098
Alignment:
| Q |
10 |
gacgagatacttcagcgacgacaactcgtaaccactcacaaattcacgccgcttgatcagctccaccatgaccggcggtgcaacatacaaatgcgtcgcc |
109 |
Q |
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| T |
27756347 |
gacgagatacttcagcgacgacaactcgtaaccgataacaacctcacgccgcttgatcagctccaccatcaccggcggagcaacatacaaatgcgtcacc |
27756248 |
T |
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| Q |
110 |
ttaaacttctccaccgccgcaaaaatcttctccaaatcaaatctaccaccaaacgacaccaccgtgttccctctccgcagctgcgtgtacgttatcccca |
209 |
Q |
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| T |
27756247 |
ttaaacttctccaccgccgcaaaagtcttctccaaatcaaatctaccaccaaacgacaccaccgtgttccctctccgcagctgcgtgtacgttatcccca |
27756148 |
T |
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| Q |
210 |
ctaaccccatcacgtggtgcattggcacaaaacacacaaacacgttcttc |
259 |
Q |
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| T |
27756147 |
ctaaccccatcacgtggtgcattggcacaaaacacacaaacacgttcttc |
27756098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 27767010 - 27766786
Alignment:
| Q |
19 |
cttcagcgacgacaactcgtaaccactcacaaattcacgccgcttgatcagctccaccatgaccggcggtgcaacatacaaatgcgtcgccttaaacttc |
118 |
Q |
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| T |
27767010 |
cttcagcgacgacaaatcataaccactcacaacctcacgccgcttgaccagctccaccatcaccggcggagcaacaaacaaatgcgtcaccctaaacttc |
27766911 |
T |
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| Q |
119 |
tccaccgccgcaaaaatcttctccaaatcaaatctaccaccaaacgacaccaccgtgttccctctccgcagctgcgtgtacgttatccccactaacccca |
218 |
Q |
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| T |
27766910 |
tccaccgccgccaaagtcttctccaaatcaaatctacccgccatggacaccaccgtgttccctctcctcagctgcgtgtataatatcaccgccaatccca |
27766811 |
T |
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| Q |
219 |
tcacgtggtgcattggcacaaaaca |
243 |
Q |
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| T |
27766810 |
tcacatgatgcatcggcaccaaaca |
27766786 |
T |
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