View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2904_low_1 (Length: 601)
Name: NF2904_low_1
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_low_1 |
 | |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 6517261 - 6516685
Alignment:
| Q |
18 |
agatgcatgttgcgttactcaagccgttcaatatttggtctctatgacattggaccttattatgaagcatggagtttgaacacggcgataaatgaagatg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6517261 |
agatgcatgttgcgttactcaagccgttcaatatttggtctctatgacactagaccttattatgaagcatggagtttgaagacggcgataaatgaagatg |
6517162 |
T |
|
| Q |
118 |
aatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6517161 |
aatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttgg |
6517062 |
T |
|
| Q |
218 |
tccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6517061 |
tccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatc |
6516962 |
T |
|
| Q |
318 |
gcaatatgttgtaacaacaggatgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagatt |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516961 |
gcaatatgttgtaacaacaggatgagtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagatt |
6516862 |
T |
|
| Q |
418 |
caccttcgtcgttgtcaccatcaccgacgtcagtcccatcactcgcagctcctcctccatttgcaaataacactaactcctatccaggtcctcataaact |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
6516861 |
caccttcgtcgttgtcaccatcaccgacgtcagtcccatcactcgcagctcctcctccatttgcaaataacactacctcctatccaggtcttcataaact |
6516762 |
T |
|
| Q |
518 |
tatcaatagacctatagaaagttttatttattaatttcatcttggccctcagcttattaaaatgaatcttggtgtta |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
6516761 |
tatcaatagacctatagaaagttttatttattaatttcatcttggtcctcaacttattaaaatgaatcttggtgtta |
6516685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 6512860 - 6512459
Alignment:
| Q |
20 |
atgcatgttgcgttactcaagccgttcaatatttggtctctatgacattggaccttattatgaagcatggagtttgaacacggcgataaatgaagatgaa |
119 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||| |||| | | |||||| |||| || |||||||||||||| || | ||||||||||||| |
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|
| T |
6512860 |
atgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagacctttttatttaggatggagtttgaacaatgctacaaatgaagatgaa |
6512761 |
T |
|
| Q |
120 |
tttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtc |
219 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6512760 |
tttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatgaggttggtc |
6512661 |
T |
|
| Q |
220 |
caaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgc |
319 |
Q |
| |
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||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||| | |||| | |
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| T |
6512660 |
aaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatccc |
6512561 |
T |
|
| Q |
320 |
aatatgttgtaacaacaggatgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattca |
419 |
Q |
| |
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|| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| || |
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| T |
6512560 |
aagatgttgtaacaacaggttgggtgctagaattgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatcca |
6512461 |
T |
|
| Q |
420 |
cc |
421 |
Q |
| |
|
|| |
|
|
| T |
6512460 |
cc |
6512459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 6521776 - 6522165
Alignment:
| Q |
20 |
atgcatgttgcgttactcaagccgttcaatatttggtctctatgacattggaccttattatgaagcatggagtttgaacacggcgataaatgaagatgaa |
119 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| | || ||||||||| |||| | |||| | |||| || | |||||| | ||| |
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| T |
6521776 |
atgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttgtttggaatacaaacaacgcaacaaatgaggttgag |
6521875 |
T |
|
| Q |
120 |
tttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtc |
219 |
Q |
| |
|
||| | |||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6521876 |
tttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtc |
6521975 |
T |
|
| Q |
220 |
caaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgc |
319 |
Q |
| |
|
||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
6521976 |
caagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttc |
6522075 |
T |
|
| Q |
320 |
aatatgttgtaacaacaggatgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaac |
409 |
Q |
| |
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|| ||||||||||| ||| | ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |
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|
| T |
6522076 |
aaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac |
6522165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 111 - 442
Target Start/End: Complemental strand, 6506862 - 6506525
Alignment:
| Q |
111 |
gaagatgaatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg |
210 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6506862 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg |
6506763 |
T |
|
| Q |
211 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaa |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |
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|
| T |
6506762 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
6506663 |
T |
|
| Q |
311 |
tgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaa |
404 |
Q |
| |
|
|||||| ||| |||||| |||| | | || |||| |||| || |||||||||||||||||||||||||||||||| ||||||| || |||||| |
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|
| T |
6506662 |
agaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
6506563 |
T |
|
| Q |
405 |
ccaacacaagattcaccttcgtcgttgtcaccatcacc |
442 |
Q |
| |
|
| ||| |||||||||||||| || | |||| ||||||| |
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|
| T |
6506562 |
caaactcaagattcaccttcatcatcgtcatcatcacc |
6506525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 47778094 - 47778148
Alignment:
| Q |
20 |
atgcatgttgcgttactcaagccgttcaatatttggtctctatgacattggacct |
74 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | ||| |||| ||||||||| |
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|
| T |
47778094 |
atgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaattggacct |
47778148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
| Q |
230 |
tcaaaccatatatggtctagctcaatgcacacctgatttgtc |
271 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||||| |
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|
| T |
47759955 |
tcaaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 111 - 442
Target Start/End: Complemental strand, 887 - 550
Alignment:
| Q |
111 |
gaagatgaatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg |
210 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
887 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg |
788 |
T |
|
| Q |
211 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaa |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |
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|
| T |
787 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
688 |
T |
|
| Q |
311 |
tgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaa |
404 |
Q |
| |
|
|||||| ||| |||||| |||| | | || |||| |||| || |||||||||||||||||||||||||||||||| ||||||| || |||||| |
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|
| T |
687 |
agaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
588 |
T |
|
| Q |
405 |
ccaacacaagattcaccttcgtcgttgtcaccatcacc |
442 |
Q |
| |
|
| ||| |||||||||||||| || | |||| ||||||| |
|
|
| T |
587 |
caaactcaagattcaccttcatcatcgtcatcatcacc |
550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 111 - 442
Target Start/End: Complemental strand, 8540 - 8203
Alignment:
| Q |
111 |
gaagatgaatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg |
210 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8540 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg |
8441 |
T |
|
| Q |
211 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaa |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |
|
|
| T |
8440 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
8341 |
T |
|
| Q |
311 |
tgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaa |
404 |
Q |
| |
|
|||||| ||| |||||| |||| | | || |||| |||| || |||||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
8340 |
agaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
8241 |
T |
|
| Q |
405 |
ccaacacaagattcaccttcgtcgttgtcaccatcacc |
442 |
Q |
| |
|
| ||| |||||||||||||| || | |||| ||||||| |
|
|
| T |
8240 |
caaactcaagattcaccttcatcatcgtcatcatcacc |
8203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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