View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2904_low_14 (Length: 236)
Name: NF2904_low_14
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_low_14 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55664187 - 55663961
Alignment:
| Q |
1 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtat----gttgcaggctgttattgaagctggtctaattgctcccctagtaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55664187 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatatatgttgcaggctgttattgaagctggtctaattgctcccctagtaa |
55664088 |
T |
|
| Q |
97 |
atcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55664087 |
atcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaa |
55663988 |
T |
|
| Q |
197 |
gttatataattttaattgttatttctg |
223 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
55663987 |
gttatataattttaattgttatttctg |
55663961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 52983476 - 52983261
Alignment:
| Q |
1 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
52983476 |
tttagttggcttatttaccgaaaaagcgctatgaactctaccttttatgtatgatacaggctgttattgaagctggtctgattgctcccctagtcaatct |
52983377 |
T |
|
| Q |
101 |
tcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagtta |
200 |
Q |
| |
|
||||||| ||||||| ||||| || |||||||||||||||||||| | | ||||||||| | | | ||||||| |||||||||||||||||||| | |
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|
| T |
52983376 |
tcttcaatatgccgagtttgacattaaaaaagaagctgcatgggcactctctaatgctacgtttagtggtacccctgagcaaatcaagtatgtga----a |
52983281 |
T |
|
| Q |
201 |
tataattttaattgttattt |
220 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
52983280 |
tatatttttaattgttattt |
52983261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 55636862 - 55637038
Alignment:
| Q |
21 |
aaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttg |
120 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| |||| |
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|
| T |
55636862 |
aaaatgcactctgaactctaccttttatgtatgatgcaggctgttattgaagctagtctgattgcccccctagtcaatcttcttcaaaatgccgagtttg |
55636961 |
T |
|
| Q |
121 |
aagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaag |
197 |
Q |
| |
|
| || ||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
55636962 |
acattgcaaaagaagctgcatgggcactctttaatgttacatctggtggtacccatgagcaaatcaagtatgtgaag |
55637038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 55619596 - 55619396
Alignment:
| Q |
1 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||| | ||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| |
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|
| T |
55619596 |
tttagttgccttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcaaagctggtctgattgctcccctagtcaatct |
55619497 |
T |
|
| Q |
101 |
tcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagtta |
200 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
55619496 |
tcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagtta |
55619397 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
55619396 |
t |
55619396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 55626900 - 55626700
Alignment:
| Q |
1 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||| | ||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
55626900 |
tttagttgccttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcgaagctggtctgattgctcccctagtcaatct |
55626801 |
T |
|
| Q |
101 |
tcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagtta |
200 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||| ||| | |||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
55626800 |
tcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgtgcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagtta |
55626701 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
55626700 |
t |
55626700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 55657946 - 55657746
Alignment:
| Q |
1 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||| | ||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
55657946 |
tttagttgccttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcaaagctggtctgattgctcccctagtcaatct |
55657847 |
T |
|
| Q |
101 |
tcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagtta |
200 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
55657846 |
tcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagtta |
55657747 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
55657746 |
t |
55657746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 54861353 - 54861159
Alignment:
| Q |
22 |
aaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttga |
121 |
Q |
| |
|
|||||| |||||||||||| ||| |||||| | |||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
54861353 |
aaaagcgctctgaactctaccttatatgtacggtgcaggctgtcattgaagctggtttgattgctcccctagtcaatcttcttcaaaatgctgagtttga |
54861254 |
T |
|
| Q |
122 |
agttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttattt |
220 |
Q |
| |
|
|| |||||||||||||||||||| | |||||||||||| || |||||||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
54861253 |
cattaaaaaagaagctgcatgggcactcactaatgctacatcaggtggtacccacgagcaaatcaagtaggtgaagttat----ttttaattgttattt |
54861159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 54629835 - 54630050
Alignment:
| Q |
1 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
54629835 |
tttagttggcttatttaccgaaaaagcactctaaactctaccttttatgcattacgcaggctgttattgaagctggtctgattgctcccctagtcaatct |
54629934 |
T |
|
| Q |
101 |
tcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagtta |
200 |
Q |
| |
|
|||||||||||| || ||||| || ||| |||| |||| |||| | ||||| ||||||||| |||||||| ||||| |||||||| |||| |||| |
|
|
| T |
54629935 |
tcttcaaaatgcagagtttgacattacaaaggaagttgcacaggcactcactaatgttacatctggtggtacccacgagcatatcaagtaggtgatgtta |
54630034 |
T |
|
| Q |
201 |
tataattttaattgttattt |
220 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
54630035 |
t----ttttaattgttattt |
54630050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 3671489 - 3671355
Alignment:
| Q |
57 |
caggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatg |
156 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || || ||||||||||||||||| || ||||| | ||| ||||| ||||||||| | | ||||| |
|
|
| T |
3671489 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
3671390 |
T |
|
| Q |
157 |
ctacatctggcggtacccatgagcaaatcaagtat |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
3671389 |
ctacatctggcagtacccatgagcaaatcgagtat |
3671355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 50190503 - 50190364
Alignment:
| Q |
55 |
tgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaa |
154 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| || || | |||||||||||||| || ||||| || |||||||||||||||||||| || || |
|
|
| T |
50190503 |
tgcaggctgttattgatgccggtcttattgctccacttgtcagacttcttcaaaatgcagagtttgacattaaaaaagaagctgcatgggcaataacaaa |
50190404 |
T |
|
| Q |
155 |
tgctacatctggcggtacccatgagcaaatcaagtatgtg |
194 |
Q |
| |
|
||||||| |||| || ||||||||| ||||||||||| |
|
|
| T |
50190403 |
tgctacagctggtggagatcatgagcaagtcaagtatgtg |
50190364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 51316242 - 51316305
Alignment:
| Q |
44 |
tttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaa |
107 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
51316242 |
tttatgtacgatgcaggctgttattgaagctggtctcattgctcccctggtcgatcttcttcaa |
51316305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 13403292 - 13403446
Alignment:
| Q |
44 |
tttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgg |
143 |
Q |
| |
|
|||||||||| || |||||||||||||||| || || |||||||| || || |||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
13403292 |
tttatgtatgatgtaggctgttattgaagccggactgattgctcctctggtcaatcttcttcaaaatgccgaatttgacattaaaaaagaagctgcatgg |
13403391 |
T |
|
| Q |
144 |
gcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagt |
198 |
Q |
| |
|
||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13403392 |
gcactctccaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagt |
13403446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 9891127 - 9891323
Alignment:
| Q |
1 |
tttagttggcttatttaccgaaaaagcactctgaactctagcttttatgt--atgttgcaggctgttattgaagctggtctaattgctcccctagtaaat |
98 |
Q |
| |
|
|||||||| |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||| || || || ||| |
|
|
| T |
9891127 |
tttagttgttttatttttcgaaaaggccgtctgaactctaccttttatgtgtatgatgcaggctgttattgaagctggtctgattgcccctctggtcaat |
9891226 |
T |
|
| Q |
99 |
cttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtga |
195 |
Q |
| |
|
|||||||||||||| || ||||| | ||| ||||| ||||||||| | | |||||||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
9891227 |
cttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatgctacatctggcagtacccatgagcaaatcgagtacgtga |
9891323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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