View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2904_low_2 (Length: 545)
Name: NF2904_low_2
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Original strand, 36222879 - 36223388
Alignment:
| Q |
20 |
agagatcacttcattcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcat |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36222879 |
agagatcacttcattcacaagcaatcaagattgggagagaattaggagaaatcaagagagaagaaagagaaatcaatgtgattgtaaactatgttctcat |
36222978 |
T |
|
| Q |
120 |
tagtaatgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaaaata |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36222979 |
tagtaatgaaaatctgagattacaagcttatatacaactacttatatggcttacttgcaatacaagtaatcaatcaaa-ctaactaactccatcaaaata |
36223077 |
T |
|
| Q |
220 |
gctaaccaaaaactaactgtttttaactactcnnnnnnnc-aactaacttgaattaaaatacaacaaaagtaagaattataccatatttatcagttcctt |
318 |
Q |
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|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223078 |
gctaaccaaaaactaactgtttttaactactctttttttccaactaacttgaattaaaatacaacaaaagtaagaattataccatatttatcagttcctt |
36223177 |
T |
|
| Q |
319 |
tcaacttatctttgatttatttagacaactcaagcacttctagtgtctgcacattgaacaaaacaattattcagcttgcaagagaacaaacatcaattcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223178 |
tcaacttatctttgatttatttagacaactcaagcacttctagtgtctgcacattgaacaaaacaattattcagcttgcaagagaacaaacatcaattcc |
36223277 |
T |
|
| Q |
419 |
cacaacaacaatctaataagtattaaagagtcacctgagtaactttggagactgaaattgcaattgcggcctttgcatcgtcatcctcctcgagacgatt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223278 |
cacaacaacaatctaataagtattaaagagtcacctgagtaactttggagactgaaattgcaattgcggcctttgcatcgtcatcctcctcgagacgatt |
36223377 |
T |
|
| Q |
519 |
gaacttaaaac |
529 |
Q |
| |
|
||||||||||| |
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| T |
36223378 |
gaacttaaaac |
36223388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 36226925 - 36227157
Alignment:
| Q |
20 |
agagatcacttcattcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcat |
119 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36226925 |
agagattacttcattcacaagcaatcgagattgggagagaattaggggaaat-aagagagaagaaagagagatcaatgtgattgtaaactatgttctcat |
36227023 |
T |
|
| Q |
120 |
ta----gtaatgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaa |
215 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||| |
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| T |
36227024 |
tatttagtaatgaaaatctaagattacaagcttatata-aacaacttatgtggcttacttgcaatacaagtaatcaatcaaaaccaaccaactcgatcaa |
36227122 |
T |
|
| Q |
216 |
aatagctaaccaaaaactaactgtttttaactact |
250 |
Q |
| |
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|||||||||| || ||||||||||||||||||||| |
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| T |
36227123 |
aatagctaacaaacaactaactgtttttaactact |
36227157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 36227185 - 36227322
Alignment:
| Q |
379 |
aaacaattattcagcttgcaagagaacaaacatcaattccca--caacaacaatctaataagtattaaagagtcacctgagtaactttggagactgaaat |
476 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
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| T |
36227185 |
aaacaattgttcagcttgcaagagaacaaacatcaactcccatacaacaacaatctaataagtactaaagagtcacctgagtgagtttggagactgaaat |
36227284 |
T |
|
| Q |
477 |
tgcaattgcggcctttgcatcgtcatcctcctcgagac |
514 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
36227285 |
tgcaattgcagcctttgcatcgtcatcctcctcgagac |
36227322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 13575558 - 13575506
Alignment:
| Q |
93 |
caatgtgattgtaaactatgttctcattagt-aatgaaaatctgagattacaa |
144 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||| |||||||||| |
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|
| T |
13575558 |
caatgtgattgtaaagtgtgttctcattagtgaatgaaaattagagattacaa |
13575506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 28067445 - 28067302
Alignment:
| Q |
100 |
attgtaaactatgttctcattagtaa-tgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaa |
198 |
Q |
| |
|
||||||||||||||| |||||||||| |||| || |||||||||| | || ||||||| || |||| | ||||||| ||||||||||||| | |||||| |
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| T |
28067445 |
attgtaaactatgttttcattagtaaatgaagatatgagattacaggtttttatacaattatttatatgacttacttccaatacaagtaattattcaaaa |
28067346 |
T |
|
| Q |
199 |
ctaactaactccatcaaaatagctaaccaaaaactaactgtttt |
242 |
Q |
| |
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||||||||||||||||||||||||||| || | |||||||||| |
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|
| T |
28067345 |
ctaactaactccatcaaaatagctaacaaactaataactgtttt |
28067302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 30547812 - 30547869
Alignment:
| Q |
449 |
tcacctgagtaactttggagactgaaattgcaattgcggcctttgcatcgtcatcctc |
506 |
Q |
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||||||||||||||| ||| || ||||||||||||||||| || ||||| |||||||| |
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| T |
30547812 |
tcacctgagtaacttcggatacggaaattgcaattgcggctttggcatcatcatcctc |
30547869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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