View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2904_low_4 (Length: 460)
Name: NF2904_low_4
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 13556832 - 13557281
Alignment:
| Q |
1 |
tacccttgaaattttaaatatcagaaccttgtatagttatatttattgcattcatctagagaccttaacctagcaaaatttgatttccacaa-------- |
92 |
Q |
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| T |
13556832 |
tacccttgaaattttaaatatcagaaccttgtatagttatatttattgcattcatctagagaccttaacctagcaaaatttgatttccacaagttcaaca |
13556931 |
T |
|
| Q |
93 |
-gtgcttaagataattatagctcaatgcaacttaaactataccttctggaattttgccaccagcaagatgtacaatactaattatgacaaacgtgaaacc |
191 |
Q |
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| T |
13556932 |
agtgcttaagataattatagctcaatgcaacttaaactataccttctggaattttgccaccagcaagatgtacaatactaattatgacaaacgtgaaacc |
13557031 |
T |
|
| Q |
192 |
agacatgtgcgctgaattcgcatccacaacatatttttcatataaatcagaaggaagtcgactaatgagaatatatgatttggcatccgcaccacctgaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13557032 |
agacatgtgcgctgaattcgcatccacaacatatttttcatataaatcagaaggaagtcgactaatgagaatatatgatttggcatccgcactacctgaa |
13557131 |
T |
|
| Q |
292 |
agatcacatgtcataagcttataatgagagaaaaagtaaatggaaacaaggaaaacacagttgaaaaactctaaggaatgcaaacatatctttacaagta |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13557132 |
agatcacatgtcataagcttataatgagagaaaaagtaaat-gaaacaaggaaaacacagttgaaaaactctaaggaatgcaaacatatctttacaagta |
13557230 |
T |
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| Q |
392 |
aaaagcaacgtagaacacatttactcattcacttcaaatctatgtacaaaa |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13557231 |
aaaagcaacgtagaacacatttactcattcacttcaaatctatgtacaaaa |
13557281 |
T |
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