View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2904_low_5 (Length: 453)

Name: NF2904_low_5
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2904_low_5
NF2904_low_5
[»] chr5 (2 HSPs)
chr5 (2-435)||(33576941-33577373)
chr5 (174-435)||(33577657-33577923)
[»] chr2 (3 HSPs)
chr2 (136-435)||(10447984-10448277)
chr2 (2-66)||(10448354-10448418)
chr2 (315-347)||(10509019-10509051)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 2 - 435
Target Start/End: Original strand, 33576941 - 33577373
Alignment:
Q  2 tgaacgaggctgggaggatatttgagaggaaacaaaaggagcgtcaggattttatacttagagaaaagttcttacagagaaaatgctcgagatcaagaat 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33576941 tgaacgaggctgggaggatatttgcgaggaaacaaaaggagcgtcaggattt-atacttagagaaaagttcttacagagaaaatgctcgagatcaagaat 33577039  T
Q  102 gtgtagtgggggaaattatttatgtttcagaagtaagttagacagattatttccgaaaccacgttctaattcgatcgcggctgatatcactttcttcaac 201  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33577040 gtgtagtgggggaaattgtttatgtttcagatgtaagttagacagattatttccgaaaccacgttctaattcgatcgcggctgatatcactttcttcaac 33577139  T
Q  202 tggaaacactacaaggtaataatattattcttttcttgcctgcattattcattccgtaactgatatactcttcggtaaatattgttttttatgttatttc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33577140 tggaaacactacaaggtaataatattattcttttcttgcctgcattattcattccgtaactgatatactcttcggtaaatattgttttttatgttatttc 33577239  T
Q  302 tttctttaaaatttgtccttgcagattagcgtaattgacacacctggtcgtggcattgataatttcactgctcgggtgaagtgtgctttgcgtgcctttg 401  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  33577240 tttctttaaaatttgtccttgcagattagcataattgacacacctggtcgtggcgttgataatttcactgctggggtgaagtgtgctttgcgtgcctttg 33577339  T
Q  402 acagtggttgccattaatgttctttgtagtgttg 435  Q
    ||||||||||||||||||||||||||||||||||    
T  33577340 acagtggttgccattaatgttctttgtagtgttg 33577373  T

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Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 174 - 435
Target Start/End: Original strand, 33577657 - 33577923
Alignment:
Q  174 gatcgcggctgatatcactttcttcaactggaaacactacaaggtaataatattattcttttcttgcctgcattattcattccgtaa-----ctgatata 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     ||||||||    
T  33577657 gatcgcggctgatatcactttcttcaactggaaacactacaaggtaataatattattcttttcttacctgcattattcattccgtaagtaaactgatata 33577756  T
Q  269 ctcttcggtaaatattgttttttatgttatttctttctttaaaatttgtccttgcagattagcgtaattgacacacctggtcgtggcattgataatttca 368  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33577757 ttcttcggttaatattgttttttatgttatttctttctttaaaatttgtccttgcagattagcgtaattgacacacctggtcgtggcgttgataatttca 33577856  T
Q  369 ctgctcgggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttg 435  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33577857 ctgctggggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttg 33577923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 136 - 435
Target Start/End: Complemental strand, 10448277 - 10447984
Alignment:
Q  136 aagttagacagattatttccgaaaccacgttctaattcgatcgcggctgatatcactttcttcaactggaaacactacaaggtaataatattattctttt 235  Q
    ||||||||||||| ||||||||||| || ||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  10448277 aagttagacagataatttccgaaacaaccttcaaattctatggcggccgatatcactttcttcagctggaaacactacaaggtaataatattattccttt 10448178  T
Q  236 cttgcctgcattattcat----------tccgt-aactgatatactcttcggtaaatattgttttttatgttatttctttctttaaaatttgtccttgca 324  Q
    ||||| ||||||||||||          |  || ||||| ||||  ||| ||| |||||||   ||||||||||||||||||||             |||    
T  10448177 cttgcttgcattattcatggaatggtagtaagtaaactgctatatgcttgggttaatattg---tttatgttatttctttcttt-------------gca 10448094  T
Q  325 gattagcgtaattgacacacctggtcgtggcattgataatttcactgctcgggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttct 424  Q
    || |||||||||||||||||||||||||||  ||||| |||||||| ||  ||||||| ||||||||| |||||||||||| || ||||||| |||||||    
T  10448093 gagtagcgtaattgacacacctggtcgtggtgttgatgatttcactactgaggtgaagcgtgctttgcatgcctttgacagcgg-tgccattcatgttct 10447995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 10448418 - 10448354
Alignment:
Q  2 tgaacgaggctgggaggatatttgagaggaaacaaaaggagcgtcaggattttatacttagagaa 66  Q
    ||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||  |||||||    
T  10448418 tgaacgaggctaggagggtatttgagaggaaacaaaaggagcatcgggattttatatgtagagaa 10448354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 10509051 - 10509019
Alignment:
Q  315 tgtccttgcagattagcgtaattgacacacctg 347  Q
    ||||||||||||| |||||||||||||||||||    
T  10509051 tgtccttgcagatgagcgtaattgacacacctg 10509019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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