View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2904_low_6 (Length: 433)
Name: NF2904_low_6
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 75 - 426
Target Start/End: Original strand, 55664222 - 55664573
Alignment:
| Q |
75 |
tcaggagtcaagacccaacccaaaacagaaaccatctgtcaatagtcgagcatcacaatacatagaaataagggtttctagtcacctaacagtccaacta |
174 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55664222 |
tcaggagtcaagacccaacccaaaacagaaaccatatgtcaatagtcaagcatcacaatacatagaaataagggtttctagtcacctaacagtccaacta |
55664321 |
T |
|
| Q |
175 |
ttactttgattggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactatcaccacatctccatgttaaacaacgtgtacctttgat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55664322 |
ttactttgattggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactatcaccacatctccatgttaaacaacgtgtacctttgat |
55664421 |
T |
|
| Q |
275 |
taatatgcatgtgatacccaaacatcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55664422 |
taatatgcatgtgatacccaaacatcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttg |
55664521 |
T |
|
| Q |
375 |
agtatataataaaaaagatgagatttagtaacctacttgtatctgctctctg |
426 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55664522 |
agtatataataaaaaagatgagatttagtaacctacttgtatctgctctctg |
55664573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 140 - 377
Target Start/End: Complemental strand, 55636719 - 55636479
Alignment:
| Q |
140 |
aaataagggtttctagtcacctaacagtccaactattactttgattggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactat-- |
237 |
Q |
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|||||||||||| |||||| |||| ||||||| |||| |||||||||||||| | ||||| ||||||||| |||||| |||||||||| | ||| |
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| T |
55636719 |
aaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcatcaacaagactacaatggttattattg |
55636620 |
T |
|
| Q |
238 |
caccacatctccatgttaaacaacgtgtac-ctttgattaatatgcatgtgatacccaaacatcaaacttgaagaaaagcatgagcaataaagaaatcga |
336 |
Q |
| |
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|||||||||||||||||||||||| |||| ||| ||| |||||||||| || |||||||||||||| ||||||| | ||| |||||||||||||| | |
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| T |
55636619 |
caccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatgcccaaacatcaaacatgaagaacaacataagcaataaagaaattaa |
55636520 |
T |
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| Q |
337 |
cattgcacttcattaaacatgatatttaacatcatttgagt |
377 |
Q |
| |
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||||||| || |||||| ||||||| |||||||||||||| |
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| T |
55636519 |
cattgcattttattaaatgtgatattcaacatcatttgagt |
55636479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 379
Target Start/End: Original strand, 52984695 - 52984786
Alignment:
| Q |
288 |
atacccaaacatcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagtat |
379 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52984695 |
atacccaaacatcaaactagaagaaacgcataagcaataaagaaattaacattgcactttattaaacatgatatttaacatcatttgagtat |
52984786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 52983850 - 52983958
Alignment:
| Q |
186 |
ggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactat--caccacatctccatgttaaacaacgtgtacctttgattaatatgca |
283 |
Q |
| |
|
||||||||| |||||||||||||| || ||| || || ||||||| ||||| |||||||||||||| ||||||||| |||| ||| ||| ||||||| |
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| T |
52983850 |
ggtgtaacctgagaactaaatataccatcaagaagactgcaatggttactatagcaccacatctccattttaaacaacatgtagcttcaatttatatgca |
52983949 |
T |
|
| Q |
284 |
tgtgatacc |
292 |
Q |
| |
|
||||||||| |
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|
| T |
52983950 |
tgtgatacc |
52983958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 54628338 - 54628234
Alignment:
| Q |
277 |
atatgcatgtgatacccaaacatca---aacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcattt |
373 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| |||||| |||| ||||| ||||| ||||| |||||||| |
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|
| T |
54628338 |
atatgtatgtgatacccaaacatcatcaaacttgaagcaaaacatgagct-taaagaaattaacattgtactttattaagcatgaaatttagcatcattt |
54628240 |
T |
|
| Q |
374 |
gagtat |
379 |
Q |
| |
|
|||||| |
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|
| T |
54628239 |
gagtat |
54628234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 422
Target Start/End: Original strand, 55627168 - 55627292
Alignment:
| Q |
297 |
catcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacat----gatatttaacatcatttgagtatataataaaaaaga |
392 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||| ||||||||| | |||| |||| ||||| |||||| |||||||| |||||||||| |
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| T |
55627168 |
catcaaacttgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcgatatgtaacattatttgagt-----ataaaaaaga |
55627262 |
T |
|
| Q |
393 |
tgagatttagtaacctacttgtatctgctc |
422 |
Q |
| |
|
|| |||||| || | |||||||||| |||| |
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|
| T |
55627263 |
tgggatttattagcttacttgtatccgctc |
55627292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 422
Target Start/End: Original strand, 55619864 - 55619988
Alignment:
| Q |
297 |
catcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacat----gatatttaacatcatttgagtatataataaaaaaga |
392 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||| ||||||||| | |||| |||| ||||| |||||| |||||||| |||||||||| |
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| T |
55619864 |
catctaacttgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcgatatgtaacattatttgagt-----ataaaaaaga |
55619958 |
T |
|
| Q |
393 |
tgagatttagtaacctacttgtatctgctc |
422 |
Q |
| |
|
|| |||||| || | |||||||||| |||| |
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|
| T |
55619959 |
tgggatttattagcttacttgtatccgctc |
55619988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 55636808 - 55636752
Alignment:
| Q |
82 |
tcaagacccaacccaaaacagaaaccatc-tgtcaatagtcgagcatcacaatacat |
137 |
Q |
| |
|
||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| |
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|
| T |
55636808 |
tcaagacccaacctagaacagaaaacataatgtcaatagtcaagcatcacaatacat |
55636752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 422
Target Start/End: Original strand, 55658214 - 55658338
Alignment:
| Q |
297 |
catcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacat----gatatttaacatcatttgagtatataataaaaaaga |
392 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||| ||||||||| | |||| |||| ||||| |||||| |||||||| |||||||||| |
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|
| T |
55658214 |
catctaacttgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcgatatgtaacattatttgagt-----ataaaaaaga |
55658308 |
T |
|
| Q |
393 |
tgagatttagtaacctacttgtatctgctc |
422 |
Q |
| |
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|| |||||| || | |||||||||| |||| |
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|
| T |
55658309 |
tgggatttattagcttacttgtatccgctc |
55658338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 9890998 - 9890819
Alignment:
| Q |
154 |
agtcacctaacagtccaactattactttgattggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactat--caccacatctccat |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || | ||| ||| |||||||||| |
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|
| T |
9890998 |
agtcacctaacaatccaactattactttgattggtgtaaccagagaactaaatatatcatcaacaagactacaatagttattattgcacaacatctccat |
9890899 |
T |
|
| Q |
252 |
gttaaacaacgtgtacctttgattaatatgcatgtgatacccaaacatcaaacttgaagaaaagcatgagcaataaagaaa |
332 |
Q |
| |
|
|||||||||| |||| || ||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
9890898 |
gttaaacaacatgtagtttcaatttatatgcatgtg-tacccaggcatcaaacttgaagaaaagcataagcaataaagaaa |
9890819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 36060556 - 36060494
Alignment:
| Q |
17 |
gaaccaaccatgctgccaacatggaaaatctatggatttcaactttatgtttagcaattcagg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36060556 |
gaaccaaccatgctgccaacatggaaaatctatggatttcaactttatgtttagcaattcagg |
36060494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 377
Target Start/End: Complemental strand, 13402954 - 13402857
Alignment:
| Q |
281 |
gcatgtgatacccaaa--catcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagt |
377 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||||| | |||||| || || |||||||| || |||| |||||||||||||||||| |||||| |
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| T |
13402954 |
gcatgtgatacccaaaaacatcaaaattgaataaaagcataaacaataa-gatattaacattgcatttaattagacatgatatttaacatcaattgagt |
13402857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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