View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2904_low_9 (Length: 283)
Name: NF2904_low_9
Description: NF2904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2904_low_9 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 67 - 279
Target Start/End: Complemental strand, 6516501 - 6516289
Alignment:
| Q |
67 |
gtacatatgaaatgtccccacggagnnnnnnngtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctct |
166 |
Q |
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| T |
6516501 |
gtacatatgaaatgtccccacggagtttttttgtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctct |
6516402 |
T |
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| Q |
167 |
tgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattgcaccttattgta |
266 |
Q |
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| T |
6516401 |
tgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattgcaccttattgta |
6516302 |
T |
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| Q |
267 |
tccttgtctctgc |
279 |
Q |
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| T |
6516301 |
tccttgtctctgc |
6516289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 6498751 - 6498599
Alignment:
| Q |
99 |
gtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatct |
198 |
Q |
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| T |
6498751 |
gtttgtgcaggaaaaagcaacaat---ggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatct |
6498655 |
T |
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| Q |
199 |
atttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattg |
254 |
Q |
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| T |
6498654 |
atttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattg |
6498599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 6505576 - 6505438
Alignment:
| Q |
101 |
ttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctat |
200 |
Q |
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| T |
6505576 |
ttgtgcaggaaaaagcaacaaca---gtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctat |
6505480 |
T |
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| Q |
201 |
ttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaa |
242 |
Q |
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| T |
6505479 |
ttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa |
6505438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 6511902 - 6511794
Alignment:
| Q |
130 |
ctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtt |
229 |
Q |
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| T |
6511902 |
ctactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatataagagtgagggagccagataaaaggtt |
6511803 |
T |
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| Q |
230 |
tgaaggtaa |
238 |
Q |
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| T |
6511802 |
tgaaggtaa |
6511794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 7254 - 7116
Alignment:
| Q |
101 |
ttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctat |
200 |
Q |
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| T |
7254 |
ttgtgcaggaaaaagcaacaaca---gtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctat |
7158 |
T |
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| Q |
201 |
ttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaa |
242 |
Q |
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| T |
7157 |
ttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa |
7116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 13581 - 13473
Alignment:
| Q |
130 |
ctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtt |
229 |
Q |
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|||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||| | | ||| ||| ||||| | |||||||| |
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| T |
13581 |
ctactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatataagagtgagggagccagataaaaggtt |
13482 |
T |
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| Q |
230 |
tgaaggtaa |
238 |
Q |
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| T |
13481 |
tgaaggtaa |
13473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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