View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2905_high_3 (Length: 302)
Name: NF2905_high_3
Description: NF2905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2905_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 26964873 - 26964709
Alignment:
| Q |
18 |
ataaactctatagttttaaagacgttgaatgtacaaactcaaatttaaaaactcaatgttggttaaactaaatattggtgtaacgatgttcagattcatc |
117 |
Q |
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| T |
26964873 |
ataaactctatagttttaaagacgttgaatgtacgaactcaaatttaaaaactcaatgttggttaaactaaatattggtgtaacgatgttcagattcatc |
26964774 |
T |
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| Q |
118 |
aaattattattgttgtagtaagtgctagtagaaagtgttttggaagtaagtcctatattttgtac |
182 |
Q |
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| T |
26964773 |
aaagtatcattgttgtagtaagtgctagtagaaagtgttttggaagtaagtcctatattttgtac |
26964709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 26939610 - 26939658
Alignment:
| Q |
18 |
ataaactctatagttttaaagacgttgaatgtacaaactcaaatttaaa |
66 |
Q |
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| T |
26939610 |
ataaactctatagttttaaagacgttgaatgtccaaactcaaatttaaa |
26939658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 26939662 - 26939721
Alignment:
| Q |
129 |
gttgtagtaagtgctagtagaaagtgttttggaagtaagtcctatattttgtaccgttaa |
188 |
Q |
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| T |
26939662 |
gttgttgtaagttctagtagaaagagttttggaagtaagtgctatattttgtaccgttaa |
26939721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 26931418 - 26931361
Alignment:
| Q |
125 |
tattgttgtagtaagtgctagtagaaagtgttttggaagtaagtcctatattttgtac |
182 |
Q |
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| T |
26931418 |
tattattgtagtaagtgccattagaaagagttttggaagtaagtgctatattttgtac |
26931361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 26964638 - 26964600
Alignment:
| Q |
253 |
atcttcattctcttacatgtaatgcttcatgtggttcat |
291 |
Q |
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| T |
26964638 |
atcttcattctcttatatgtaatgcttcatgtggttcat |
26964600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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