View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2905_low_1 (Length: 900)
Name: NF2905_low_1
Description: NF2905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2905_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 808; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 16 - 888
Target Start/End: Original strand, 29208198 - 29209070
Alignment:
| Q |
16 |
tctttgtctaacaacattgtaaaatagcgttgttaaatagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatg |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||| | |
|
|
| T |
29208198 |
tctttgtccaacaacattgtaaaatagcgttgttaaatagtggtgctataacgctatagtgtaatagaatttgaacaaatcgttattgttccacgatacg |
29208297 |
T |
|
| Q |
116 |
ctgtttagtacaaaatgttttgaaatattggatacaatgacgctatatatagcaccgttgcgtagctgagtttgaacaaaaactattttttgcaattaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208298 |
ctgtttagtacaaaatgttttgaaatagtggatacaatgacgctatatatagcactgttgcgtagctgagtttgaacaaaaactattttttgcaattagc |
29208397 |
T |
|
| Q |
216 |
aattatgttagagggtactgnnnnnnntctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaa |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208398 |
aattatgttagagggtactgaaaaaaatctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaa |
29208497 |
T |
|
| Q |
316 |
acttttggccatggaaaattaaggaaattgcaaaagaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattata |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208498 |
acttttggccatggaaaattaaggaaaatgcaaaagaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattata |
29208597 |
T |
|
| Q |
416 |
aaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagttgaataaatgtgtaactatgtaaccgttgttgaattg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208598 |
aaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaaccgttgttgaattg |
29208697 |
T |
|
| Q |
516 |
agggggctatataaagagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctcta |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208698 |
agggggctatataaagagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctcta |
29208797 |
T |
|
| Q |
616 |
ggatttgcatgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagct |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208798 |
ggatttgcatgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagct |
29208897 |
T |
|
| Q |
716 |
taagtgagggataatccatggttcacattaattaatccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgtt |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208898 |
taagtgagggataatccatggttcacattaattaatccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgtt |
29208997 |
T |
|
| Q |
816 |
atagttgattggaattcaataattttctatgctctattaagttttgttttagaattaatgtttgttgtctctg |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208998 |
atagttgattggaattcaataattttctatgctctattaagttttgttttagaattaatgtttgttgtctctg |
29209070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 55470029 - 55469937
Alignment:
| Q |
44 |
gttgttaaatagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtttt |
136 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| | ||||| |||||| || |||||||| || |||||||| ||||||||||| |||| |
|
|
| T |
55470029 |
gttgttaaatagtggcgctataccgctatagtgtagcggaatttaaacaaaccgctattgttccgtggtatgctgtgtagtacaaaatatttt |
55469937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 432 - 698
Target Start/End: Complemental strand, 38377782 - 38377513
Alignment:
| Q |
432 |
tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagttgaataaatgtgtaactatgtaac----cgttgttgaattgagggggctatat |
527 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||| || | ||||||||||||| | | |||| ||||| ||||| |||||| |
|
|
| T |
38377782 |
tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtggacttgatgtgtaactatgcagctagtcgttattgaaca-aggggactatat |
38377684 |
T |
|
| Q |
528 |
aaa--gagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaat--ttaatttctgttgctacatcacaaacatgctctaggatttgc |
623 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38377683 |
atatagagtgagaaaatatgaagtttggaggttggtaactgtctgaaaggttcaatatttaatttctgttgctacatca---acatgctctaggatttgc |
38377587 |
T |
|
| Q |
624 |
atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttcctt |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
38377586 |
atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttatcaatcc-tattatgttcctt |
38377513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 38378240 - 38378088
Alignment:
| Q |
243 |
tctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
38378240 |
tctaggtatctcaccattcctttagaatcaataatactccaatgagatgaagactgtgaagtgttcttgacaaacttttcaccgcagaaaattaaggaaa |
38378141 |
T |
|
| Q |
343 |
ttgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa |
394 |
Q |
| |
|
|||||| |||| | ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
38378140 |
atgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa |
38378088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 13298529 - 13298575
Alignment:
| Q |
83 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa |
129 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
13298529 |
aatttgaacaaatcactattgttctgtgatatgctatttagtacaaa |
13298575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 39647320 - 39647243
Alignment:
| Q |
52 |
atagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa |
129 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
39647320 |
atagtggtgctataacgctatactgtagtggaatttgaataaatcgttattgttctgcgatatgctgtttagcacaaa |
39647243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 39647188 - 39647139
Alignment:
| Q |
83 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatg |
132 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
39647188 |
aatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaatg |
39647139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 8928459 - 8928401
Alignment:
| Q |
84 |
atttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata |
142 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
8928459 |
atttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaata |
8928401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 11257713 - 11257779
Alignment:
| Q |
68 |
gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
134 |
Q |
| |
|
||||||||||| | ||| ||||||||||| ||||||| || |||||||| |||||||||||||||| |
|
|
| T |
11257713 |
gctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgtt |
11257779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 2219599 - 2219538
Alignment:
| Q |
70 |
tatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaat |
131 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
2219599 |
tatagtgtagtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaat |
2219538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 23117446 - 23117361
Alignment:
| Q |
57 |
ggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata |
142 |
Q |
| |
|
|||| ||||||||||| | || || ||||||||||||||| |||| ||| |||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
23117446 |
ggtgttataacgctattgaatagcagaatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaata |
23117361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 24672350 - 24672266
Alignment:
| Q |
68 |
gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaatattggatacaa |
152 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||||||| ||| ||| ||||||||| ||| |||| ||||| ||| ||||| |
|
|
| T |
24672350 |
gctatagcataacataatttgcacaaatagttattgttctacaatacgctatttagtacataatattttcaaatagtggctacaa |
24672266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 23218681 - 23218630
Alignment:
| Q |
83 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
134 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
23218681 |
aatttggacaaatcgtcattgttctatgatacgctatttaatacaaaatgtt |
23218630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 33651641 - 33651706
Alignment:
| Q |
69 |
ctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
134 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
33651641 |
ctatagtgtagcagtattcgaacaaatcgttattgttctacaatatgctatttagtataaaatgtt |
33651706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 6026031 - 6025980
Alignment:
| Q |
83 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
134 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
6026031 |
aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgtt |
6025980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 2732936 - 2732987
Alignment:
| Q |
83 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
134 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||| |||||||||||||||| |
|
|
| T |
2732936 |
aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgtt |
2732987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 17333566 - 17333528
Alignment:
| Q |
68 |
gctatagtgtaacataatttgaacaaatcgttattgttc |
106 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17333566 |
gctatagtgtagcgtaatttgaacaaatcgttattgttc |
17333528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University