View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2905_low_6 (Length: 228)

Name: NF2905_low_6
Description: NF2905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2905_low_6
NF2905_low_6
[»] chr3 (14 HSPs)
chr3 (8-228)||(31788992-31789213)
chr3 (8-62)||(4222141-4222195)
chr3 (8-62)||(46518628-46518682)
chr3 (8-59)||(28928901-28928952)
chr3 (2-64)||(16354908-16354970)
chr3 (8-62)||(26988996-26989049)
chr3 (8-62)||(40063619-40063673)
chr3 (8-62)||(5499429-5499483)
chr3 (8-62)||(15048083-15048137)
chr3 (8-62)||(19154631-19154685)
chr3 (8-62)||(26481927-26481981)
chr3 (8-62)||(30311306-30311360)
chr3 (8-62)||(31520627-31520681)
chr3 (30-62)||(27093405-27093437)
[»] chr2 (12 HSPs)
chr2 (8-62)||(34041610-34041664)
chr2 (8-62)||(16381676-16381730)
chr2 (8-62)||(37480075-37480129)
chr2 (8-62)||(42327417-42327471)
chr2 (8-61)||(16918600-16918653)
chr2 (9-62)||(42602554-42602607)
chr2 (9-44)||(1246009-1246044)
chr2 (8-62)||(4439001-4439055)
chr2 (8-62)||(29503271-29503325)
chr2 (8-62)||(42922414-42922468)
chr2 (30-62)||(11251087-11251119)
chr2 (9-61)||(37755994-37756046)
[»] chr8 (14 HSPs)
chr8 (8-62)||(19703509-19703563)
chr8 (4-60)||(3624582-3624638)
chr8 (8-62)||(16852340-16852394)
chr8 (8-60)||(2203494-2203546)
chr8 (3-63)||(30483901-30483961)
chr8 (8-63)||(20994480-20994535)
chr8 (8-62)||(3826799-3826853)
chr8 (8-62)||(6569793-6569847)
chr8 (8-62)||(28783060-28783114)
chr8 (4-62)||(40872876-40872934)
chr8 (30-62)||(5264544-5264576)
chr8 (6-62)||(8484999-8485055)
chr8 (30-62)||(18540298-18540330)
chr8 (30-62)||(23874426-23874458)
[»] chr7 (10 HSPs)
chr7 (8-62)||(48771938-48771992)
chr7 (8-62)||(25021357-25021411)
chr7 (8-62)||(26459432-26459486)
chr7 (8-62)||(45709730-45709784)
chr7 (6-62)||(39499739-39499795)
chr7 (11-62)||(42836026-42836077)
chr7 (6-64)||(26199507-26199565)
chr7 (30-62)||(24513797-24513829)
chr7 (30-62)||(39631844-39631876)
chr7 (30-62)||(45559200-45559232)
[»] chr5 (9 HSPs)
chr5 (8-62)||(26598524-26598578)
chr5 (8-63)||(21549159-21549214)
chr5 (8-62)||(29075781-29075835)
chr5 (8-62)||(43230796-43230852)
chr5 (8-62)||(22020884-22020938)
chr5 (8-62)||(30109330-30109384)
chr5 (8-62)||(30883220-30883274)
chr5 (30-62)||(7918513-7918545)
chr5 (30-62)||(25627057-25627089)
[»] chr4 (9 HSPs)
chr4 (4-62)||(1730507-1730565)
chr4 (8-62)||(37109373-37109427)
chr4 (8-62)||(46545711-46545765)
chr4 (13-62)||(27965537-27965586)
chr4 (10-62)||(51250546-51250598)
chr4 (8-62)||(33619206-33619260)
chr4 (8-62)||(37443702-37443756)
chr4 (9-62)||(9241048-9241101)
chr4 (26-62)||(21434811-21434847)
[»] chr1 (12 HSPs)
chr1 (8-62)||(25297772-25297826)
chr1 (8-62)||(9165217-9165271)
chr1 (8-60)||(33700795-33700847)
chr1 (8-55)||(13578739-13578786)
chr1 (8-63)||(19528349-19528404)
chr1 (4-59)||(24730387-24730442)
chr1 (8-62)||(8177204-8177258)
chr1 (8-58)||(17745278-17745328)
chr1 (8-62)||(31794286-31794340)
chr1 (8-62)||(36371470-36371524)
chr1 (2-62)||(4566548-4566608)
chr1 (83-127)||(23266027-23266071)
[»] chr6 (6 HSPs)
chr6 (5-62)||(30127400-30127457)
chr6 (8-62)||(12188325-12188379)
chr6 (6-64)||(34877093-34877151)
chr6 (9-60)||(32613163-32613214)
chr6 (8-62)||(24641212-24641266)
chr6 (8-62)||(32201907-32201961)
[»] scaffold0118 (1 HSPs)
scaffold0118 (8-62)||(41655-41709)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 31788992 - 31789213
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttggaagaacaagaaattaatgttcaattttatcaaagatggagttt 107  Q
    ||||||||||||| |||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31788992 gaggagcacactcccagatcccaagccaataacactaggccaacccaagtgggttggaagaacaagaaattagtgttcaattttatcaaagatggagttt 31789091  T
Q  108 ggaagaaaataaattcttggtaagactttgtctggtgcaggtagaaaggttcttatcaagtttgc-ttctgtgccataagaaatatttgtgcactgaaga 206  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||  ||||||||||||||||||||||||||    
T  31789092 ggaagaaaataaattcttggtaagacgttgtctggtgcaggtagaaaggttcttatcaagtgtgctttcagtagcataagaaatatttgtgcactgaaga 31789191  T
Q  207 tgaaatttccagatttagtttt 228  Q
    ||||||||||||||||||||||    
T  31789192 tgaaatttccagatttagtttt 31789213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 4222195 - 4222141
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||||||||||    
T  4222195 gaggagcacactcccagatcccaagccaataccactaagccaacccaagtgggtt 4222141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 46518682 - 46518628
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || ||||||||||||||| |||||||||||||||||    
T  46518682 gaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggtt 46518628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 28928901 - 28928952
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgg 59  Q
    |||||||||||||||||| || ||||||||||||||| ||||| ||||||||    
T  28928901 gaggagcacactctcagatcccaagccaataccactaggccaatccaagtgg 28928952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 16354908 - 16354970
Alignment:
Q  2 cctgaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttgg 64  Q
    ||||| ||||||||||||| |||   | ||||||||||||||| |||||||||||||||||||    
T  16354908 cctgaggaggagcacactcacaggttccaagccaataccactaggccaacccaagtgggttgg 16354970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 26989049 - 26988996
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||| ||||||||| || ||||||||||||||| |||||||||||||||||    
T  26989049 gaggagcaaactctcagatcc-aagccaataccactaggccaacccaagtgggtt 26988996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 40063673 - 40063619
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||| ||||||||| || |||||||||| |||||| |||||||||||||||    
T  40063673 gaggagcatactctcagatcccaagccaatactactaagtcaacccaagtgggtt 40063619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 5499429 - 5499483
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| |  ||| ||||||||| | |||||||||||||||||    
T  5499429 gaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtt 5499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 15048083 - 15048137
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||| || |||| || ||||| |||||| ||||||||||||||||||||    
T  15048083 gaggagcacattcccagatcccaagcctataccattaagccaacccaagtgggtt 15048137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 19154685 - 19154631
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||||| ||  |||||||||| |||| |||||||||| ||||||    
T  19154685 gaggagcacactctcaggcctcaagccaatacaactaggccaacccaaatgggtt 19154631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 26481981 - 26481927
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||  || |||||| |||||| |||| ||||||||||||||    
T  26481981 gaggagcacactctcaggtcccaagccattaccaccaagctaacccaagtgggtt 26481927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 30311360 - 30311306
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || ||||| ||||||||| ||||||||| |||||||    
T  30311360 gaggagcacactcccagatcccaagcctataccactaggccaacccaggtgggtt 30311306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 31520627 - 31520681
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || |||||||| |||| | |||||||||||||||||    
T  31520627 gaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggtt 31520681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 27093405 - 27093437
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  27093405 aagccaataccactaggccaacccaagtgggtt 27093437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 34041610 - 34041664
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  34041610 gaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggtt 34041664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 16381676 - 16381730
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||    
T  16381676 gaggagaacactctcagatcccaagcctataccactaggccaacccaagtgggtt 16381730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 37480129 - 37480075
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||  || ||||||||||||| | |||||||||||||||||    
T  37480129 gaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 42327417 - 42327471
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  42327417 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 16918600 - 16918653
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggt 61  Q
    ||||||||||||| |||| || || |||||||||||| ||||||||||||||||    
T  16918600 gaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgggt 16918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 42602607 - 42602554
Alignment:
Q  9 aggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  42602607 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 1246044 - 1246009
Alignment:
Q  9 aggagcacactctcagaccctaagccaataccacta 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  1246044 aggagcacactctcagaccccaagccaataccacta 1246009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 4439001 - 4439055
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| || |||  ||||||| || |||||||||||||||||    
T  4439001 gaggagcacactctcagatcccaagttaataccattaggccaacccaagtgggtt 4439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 29503325 - 29503271
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || || |||||||||||| |||||||||||||||||    
T  29503325 gaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggtt 29503271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 42922468 - 42922414
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||   | ||||||||||||||| |||||||||||||||||    
T  42922468 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtt 42922414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 11251119 - 11251087
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||||||||||| |||||||||    
T  11251119 aagccaataccactaagccaacctaagtgggtt 11251087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 37755994 - 37756046
Alignment:
Q  9 aggagcacactctcagaccctaagccaataccactaagccaacccaagtgggt 61  Q
    ||||||||| || |||  || ||||||||||||| ||||||||||||||||||    
T  37755994 aggagcacattcccaggtcccaagccaataccaccaagccaacccaagtgggt 37756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 19703509 - 19703563
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||  || ||||||||||||||| |||||||||||||||||    
T  19703509 gaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggtt 19703563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 3624638 - 3624582
Alignment:
Q  4 tgaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtggg 60  Q
    ||||||||||||||||| |||  || ||||||||||||||| |||||||||||||||    
T  3624638 tgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 16852394 - 16852340
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  16852394 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 2203546 - 2203494
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtggg 60  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||    
T  2203546 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 30483901 - 30483961
Alignment:
Q  3 ctgaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttg 63  Q
    |||| ||||||||||||| || | || ||||||||||||||  ||||||||||||||||||    
T  30483901 ctgaggaggagcacactcccatatcccaagccaataccactgggccaacccaagtgggttg 30483961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 20994480 - 20994535
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttg 63  Q
    ||||||||||||| |||  || ||| ||||||||||| ||||||||||||||||||    
T  20994480 gaggagcacactcccaggtcccaagtcaataccactaggccaacccaagtgggttg 20994535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 3826799 - 3826853
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||| |    ||||||||||||||| |||||||||||||||||    
T  3826799 gaggagcacactctcaaatggcaagccaataccactaggccaacccaagtgggtt 3826853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 6569793 - 6569847
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || ||||||||| ||||| ||||||| |||||||||    
T  6569793 gaggagcacactcccagatcccaagccaatatcactaggccaacctaagtgggtt 6569847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 28783114 - 28783060
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  |  ||||||||||||| |||||||||||||||||||    
T  28783114 gaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 40872934 - 40872876
Alignment:
Q  4 tgaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| ||| |||||  ||||| ||| | |||||||||||||||||    
T  40872934 tgaagaggagcacactctaagatcctaaatcaatatcaccatgccaacccaagtgggtt 40872876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 5264576 - 5264544
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  5264576 aagccaataccactaggccaacccaagtgggtt 5264544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 8485055 - 8484999
Alignment:
Q  6 aagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||  || |||| |||||||| | |||||||||||||||||    
T  8485055 aagaggagcacactcacaggtcccaagcaaataccaccaggccaacccaagtgggtt 8484999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 18540330 - 18540298
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  18540330 aagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 23874426 - 23874458
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  23874426 aagccaataccactaggccaacccaagtgggtt 23874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 48771992 - 48771938
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  48771992 gaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 25021357 - 25021411
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  25021357 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 26459432 - 26459486
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  26459432 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 45709730 - 45709784
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| || |||| |||||||||| |||||||||| ||||||    
T  45709730 gaggagcacactctcagatcccaagctaataccactaggccaacccaaatgggtt 45709784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 39499739 - 39499795
Alignment:
Q  6 aagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||| ||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  39499739 aagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgggtt 39499795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 42836026 - 42836077
Alignment:
Q  11 gagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  42836026 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42836077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 26199565 - 26199507
Alignment:
Q  6 aagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttgg 64  Q
    |||||||| ||| ||||||  || ||||||||||||||| |||||| ||||||||||||    
T  26199565 aagaggagtacattctcaggtcccaagccaataccactaggccaactcaagtgggttgg 26199507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 24513829 - 24513797
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  24513829 aagccaataccactaggccaacccaagtgggtt 24513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 39631876 - 39631844
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  39631876 aagccaataccactaggccaacccaagtgggtt 39631844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 45559232 - 45559200
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  45559232 aagccaataccactaggccaacccaagtgggtt 45559200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 26598578 - 26598524
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| || ||||||||||||||| ||||| |||||||||||    
T  26598578 gaggagcacactctcagatcccaagccaataccactaggccaatccaagtgggtt 26598524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 21549159 - 21549214
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttg 63  Q
    ||||||||||||| |||  || ||||||||||||||| ||||||||||||||||||    
T  21549159 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttg 21549214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 29075835 - 29075781
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || ||||||||||||||| || ||||||||||||||    
T  29075835 gaggagcacactcccagatcccaagccaataccactaggcaaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 43230796 - 43230852
Alignment:
Q  8 gaggagcacactctcagaccctaagcca--ataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| || ||||||  ||||||||| |||||||||||||||||    
T  43230796 gaggagcacactctcagaacccaagccaatataccactaggccaacccaagtgggtt 43230852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 22020884 - 22020938
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || |||| |||||||||| ||||||||||| |||||    
T  22020884 gaggagcacactcccagatcccaagctaataccactatgccaacccaagagggtt 22020938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 30109330 - 30109384
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  |  ||||||||||||| |||||||||||||||||||    
T  30109330 gaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggtt 30109384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 30883220 - 30883274
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || |||||||||||||||  ||||||||||||||||    
T  30883220 gaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 7918513 - 7918545
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  7918513 aagccaataccactaggccaacccaagtgggtt 7918545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 25627089 - 25627057
Alignment:
Q  30 aagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||| |||||||||||||||||    
T  25627089 aagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 1730507 - 1730565
Alignment:
Q  4 tgaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||||||  || ||||||||||||||| | |||||||||||||||    
T  1730507 tgaagaggagcacactctcaggtcccaagccaataccactaggtcaacccaagtgggtt 1730565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 37109373 - 37109427
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  37109373 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 46545765 - 46545711
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||  |  ||||||||||||||| |||||||||||||||||    
T  46545765 gaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27965537 - 27965586
Alignment:
Q  13 gcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||| |||| || ||||||||||||||| |||||||||||||||||    
T  27965537 gcacactcccagatcccaagccaataccactaggccaacccaagtgggtt 27965586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 51250546 - 51250598
Alignment:
Q  10 ggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||| |||| || ||||||||||||| | |||||||||||||||||    
T  51250546 ggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 33619260 - 33619206
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||| ||| ||| |||| |||||||||||||||| ||| |||||||||||||||    
T  33619260 gaggaccacgctcccagatcctaagccaataccaccaaggcaacccaagtgggtt 33619206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 37443756 - 37443702
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||| |||||| |||| || ||||||||||||||| | |||||||||||||||    
T  37443756 gaggagtacactcccagatcccaagccaataccactaggtcaacccaagtgggtt 37443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 9241048 - 9241101
Alignment:
Q  9 aggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||  |||| || ||||||||||||| | |||||||||||||||||    
T  9241048 aggagcacactaccagatcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 21434847 - 21434811
Alignment:
Q  26 ccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  21434847 ccctaagccaataccactaggccaacccaaatgggtt 21434811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 25297826 - 25297772
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||||| |||||| |||||||||||  ||||||||||||||||    
T  25297826 gaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggtt 25297772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 9165217 - 9165271
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  9165217 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 33700795 - 33700847
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtggg 60  Q
    ||||||||||||| ||||  | ||||||||||||||| |||||||||||||||    
T  33700795 gaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 13578739 - 13578786
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaa 55  Q
    ||||||||||||||||||||||||| ||| |||||||  |||||||||    
T  13578739 gaggagcacactctcagaccctaagtcaaaaccactagaccaacccaa 13578786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 19528349 - 19528404
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttg 63  Q
    |||||||||||||  ||| || ||||||||||||| | ||||||||||||||||||    
T  19528349 gaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggttg 19528404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 24730442 - 24730387
Alignment:
Q  4 tgaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgg 59  Q
    ||||||||||||||||| |||| |  ||| ||||||||||| ||||||||||||||    
T  24730442 tgaagaggagcacactcccagatctcaagacaataccactaggccaacccaagtgg 24730387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 8177204 - 8177258
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || ||||||||||||||| |||||| ||| ||||||    
T  8177204 gaggagcacactcccagatcccaagccaataccactaggccaactcaaatgggtt 8177258  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 17745278 - 17745328
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtg 58  Q
    ||||||||||| |||||  || ||||||||||||||| |||||||||||||    
T  17745278 gaggagcacacgctcaggtcccaagccaataccactaggccaacccaagtg 17745328  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 31794286 - 31794340
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| ||   || ||||||||||||||| |||||||||||||||||    
T  31794286 gaggagcacactcccaagtcccaagccaataccactaggccaacccaagtgggtt 31794340  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 36371524 - 36371470
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||   | ||||||||||||||| |||||||||||||||||    
T  36371524 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtt 36371470  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 4566608 - 4566548
Alignment:
Q  2 cctgaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||| ||||||||||||| |||   | ||||||||| ||||| |||||||||||||||||    
T  4566608 cctgaggaggagcacactcccaggttccaagccaatatcactaggccaacccaagtgggtt 4566548  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 23266071 - 23266027
Alignment:
Q  83 ttcaattttatcaaagatggagtttggaagaaaataaattcttgg 127  Q
    ||||| |||||||||||  | ||||||||||||||||||||||||    
T  23266071 ttcaactttatcaaagaccgtgtttggaagaaaataaattcttgg 23266027  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 30127457 - 30127400
Alignment:
Q  5 gaagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||||| ||||||| ||||||||||||| |  ||||||||||||||||    
T  30127457 gaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 12188325 - 12188379
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||  || ||||||||||||||| |||||||||||||||||    
T  12188325 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 12188379  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 34877093 - 34877151
Alignment:
Q  6 aagaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggttgg 64  Q
    |||||||||||| | ||||| |||||| | ||||||||| |||||||||||||||||||    
T  34877093 aagaggagcacattttcagatcctaagtctataccactaggccaacccaagtgggttgg 34877151  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 32613163 - 32613214
Alignment:
Q  9 aggagcacactctcagaccctaagccaataccactaagccaacccaagtggg 60  Q
    |||||||||||| ||||||| ||| ||||||||| | |||||||||||||||    
T  32613163 aggagcacactcccagaccccaagtcaataccaccaggccaacccaagtggg 32613214  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 24641212 - 24641266
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    ||||||||||||| |||| || ||| ||||||||| |||||||||||| ||||||    
T  24641212 gaggagcacactcccagatcccaagtcaataccaccaagccaacccaaatgggtt 24641266  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 32201907 - 32201961
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||||||||| ||| || ||||||||||||| ||| |||||||| ||||||    
T  32201907 gaggagcacactctgagatcccaagccaataccaccaagtcaacccaaatgggtt 32201961  T

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Target: scaffold0118 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 41655 - 41709
Alignment:
Q  8 gaggagcacactctcagaccctaagccaataccactaagccaacccaagtgggtt 62  Q
    |||||||| ||||||||| |  ||||||||||||||| |||||||||||||||||    
T  41655 gaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

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