View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2906_high_10 (Length: 396)

Name: NF2906_high_10
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2906_high_10
NF2906_high_10
[»] chr5 (3 HSPs)
chr5 (11-376)||(34543114-34543474)
chr5 (63-123)||(24406564-24406624)
chr5 (22-126)||(26526511-26526614)
[»] chr7 (3 HSPs)
chr7 (22-126)||(6328201-6328304)
chr7 (82-126)||(30215850-30215894)
chr7 (22-126)||(9506869-9506972)
[»] chr1 (3 HSPs)
chr1 (22-126)||(32947618-32947721)
chr1 (33-126)||(11080999-11081091)
chr1 (59-123)||(8050483-8050547)
[»] chr8 (2 HSPs)
chr8 (22-124)||(28183738-28183839)
chr8 (22-122)||(11109884-11109983)
[»] chr4 (1 HSPs)
chr4 (52-101)||(48391712-48391761)
[»] chr2 (3 HSPs)
chr2 (22-92)||(22999107-22999176)
chr2 (22-123)||(40630196-40630296)
chr2 (58-102)||(1910823-1910867)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 376
Target Start/End: Original strand, 34543114 - 34543474
Alignment:
Q  11 caaaggtatcgtaaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttga 110  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||  | || ||||||| ||||||||||| ||||||||||||||||||    
T  34543114 caaaggtatcataaactcacaaacataaagtg-aggtgccgggggtacgaaccccgatgatgacgtccaacctaataatttcaatatttttgttggttga 34543212  T
Q  111 gctaagacttatgagatattttcaaaggttttaattggcggggaaatgcacacgcttctttaacattagatatgtttttattccatagtcaagtttacaa 210  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34543213 gctaggacttatgagacattttcaaaggttttaattggcggggaaatgcacacgcttctttaacattatatatgtttttattccatagtcaagtttacaa 34543312  T
Q  211 ctctaccattatttatttatatatacatgctaaaaactcaaccacatatataccattatatctaaaactatcttccacagcgtttgtgctgagattgaca 310  Q
    ||||||||||||    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34543313 ctctaccattat----ttatatatacatgctaaaaactcaaccacatatatatcattatatctaaaactatcttccacagcgtttgtgctgagattgaca 34543408  T
Q  311 atgaacgctccactttcgttgatttcctcaatattattttcataaggaataatataatattgtaag 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34543409 atgaacgctccactttcgttgatttcctcaatattattttcataaggaataatataatattgtaag 34543474  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 24406624 - 24406564
Alignment:
Q  63 cccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagacttatg 123  Q
    |||| |||| |||||| ||||||||||||||  ||||||||  ||||||||| ||||||||    
T  24406624 cccaatcatgacgtccggcctaataattttagcatttttgtcagttgagctatgacttatg 24406564  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 26526614 - 26526511
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagactta 121  Q
    |||||||||| |||||||||||||||  | || || |||||| | ||||| |||| | |||||| |||||   ||||||||   ||||||||||||||||    
T  26526614 taaactcacacacataaagtggaggt-accggagttcgaacctcggtcatgacgttcggcctaacaatttcggtatttttgccagttgagctaagactta 26526516  T
Q  122 tgaga 126  Q
    |||||    
T  26526515 tgaga 26526511  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 6328201 - 6328304
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagactta 121  Q
    |||||||||| ||||||||||||||| |||||| | ||||||| |||||| ||||||| ||||| |||||| | |||||||   ||||||||||||||||    
T  6328201 taaactcacacacataaagtggaggtatcggggtt-cgaaccctagtcatgacgtccaacctaacaattttgacatttttgccagttgagctaagactta 6328299  T
Q  122 tgaga 126  Q
    |||||    
T  6328300 tgaga 6328304  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 30215850 - 30215894
Alignment:
Q  82 ctaataattttaatatttttgttggttgagctaagacttatgaga 126  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||    
T  30215850 ctaacaattttaatatttttgttagttgagctatgacttatgaga 30215894  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 9506869 - 9506972
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagactta 121  Q
    |||||||||| ||| |||||||||||  ||| | | |||||| | ||||| | |||| |||||| |||||| ||||||||||  ||| ||||| ||||||    
T  9506869 taaactcacacacacaaagtggaggtaccggagtt-cgaacctcggtcatgatgtccggcctaacaattttgatatttttgtcagttaagctaggactta 9506967  T
Q  122 tgaga 126  Q
    |||||    
T  9506968 tgaga 9506972  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 32947721 - 32947618
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagactta 121  Q
    |||||||||| ||||||||||||| |||||||| | ||||| || ||||  |||| | |||||| |||||||| ||||||||  ||||||||| ||||||    
T  32947721 taaactcacacacataaagtggagatgtcggggtt-cgaactccggtcaagacgttcggcctaacaattttaacatttttgtcagttgagctaggactta 32947623  T
Q  122 tgaga 126  Q
    |||||    
T  32947622 tgaga 32947618  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 11080999 - 11081091
Alignment:
Q  33 acataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagacttatgaga 126  Q
    ||||||||||||||| |||||| |  ||||||| |||||||||||| |||||  ||||| || |||||||   |||||| ||||||||||||||    
T  11080999 acataaagtggaggtatcggggttt-gaaccccggtcataacgtccggcctagcaatttcaacatttttgccagttgagttaagacttatgaga 11081091  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 8050547 - 8050483
Alignment:
Q  59 gaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagacttatg 123  Q
    ||||||| |||||||| | | |||||| |||||  | |||||||| |||||||||||||||||||    
T  8050547 gaaccccggtcataacattcggcctaacaatttcgacatttttgtcggttgagctaagacttatg 8050483  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 28183738 - 28183839
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagactta 121  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||| ||||  |  ||| ||||||||||||    ||||||||  ||||||||||||||||    
T  28183738 taaactcacacacacaaagtggaggtgtc-ggggttcgaaccccggtcaagaaatccggcctaataatttcggcatttttgtcagttgagctaagactta 28183836  T
Q  122 tga 124  Q
    |||    
T  28183837 tga 28183839  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 11109884 - 11109983
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagactta 121  Q
    |||||| ||| ||||||||||||| |  ||||| | |||||||||||||| ||||||||| ||| ||||||   ||||||   |||||||||||||||||    
T  11109884 taaactaacacacataaagtggagataccggggtt-cgaaccccagtcatgacgtccagcttaacaattttggcatttttaccggttgagctaagactta 11109982  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 48391761 - 48391712
Alignment:
Q  52 ggggtacgaaccccagtcataacgtccagcctaataattttaatattttt 101  Q
    ||||| |||||||||||||| ||||||||||||| |||||| ||||||||    
T  48391761 ggggttcgaaccccagtcatgacgtccagcctaacaattttgatattttt 48391712  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 22999176 - 22999107
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataatttt 92  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||| ||||| |||||| | |||| ||||||    
T  22999176 taaactcacacacacaaagtggaggtgtc-ggggttcgaaccccggtcatgacgtccggactaacaatttt 22999107  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 40630196 - 40630296
Alignment:
Q  22 taaactcacaaacataaagtggaggtgtcgggggtacgaaccccagtcataacgtccagcctaataattttaatatttttgttggttgagctaagactta 121  Q
    |||||||||| | | ||||||||||||| |||| || ||||||| ||||  |  | | ||||||||||||| | |||||||| |||||| ||||||||||    
T  40630196 taaactcacacaaacaaagtggaggtgtaggggtta-gaaccccggtcaagattttcggcctaataattttgacatttttgtcggttgaactaagactta 40630294  T
Q  122 tg 123  Q
    ||    
T  40630295 tg 40630296  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 1910867 - 1910823
Alignment:
Q  58 cgaaccccagtcataacgtccagcctaataattttaatatttttg 102  Q
    |||||||| |||||||| ||| ||||||||||||||| |||||||    
T  1910867 cgaaccccggtcataacatccggcctaataattttaacatttttg 1910823  T

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