View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_high_13 (Length: 389)
Name: NF2906_high_13
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 389
Target Start/End: Complemental strand, 11960545 - 11960185
Alignment:
| Q |
30 |
cagtttgatagggatgtaaaaattggaaatttaaaattaaactaaaaagttaacaccaccaacttcatcctttaatcttctccaaaacatcattatgaat |
129 |
Q |
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| T |
11960545 |
cagtttgatagggatgtaaaaattggaaatttaaaattaaactaaaaagttaacaccaccaacttcatcctttaatcttctccaaaacatcatcatgaat |
11960446 |
T |
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| Q |
130 |
ttatgactatccctgaaactagcaagattttttccactgcta-ttcgccacacaccaccgctgccaaaccacaaacaactcttgggaaaacacatacaaa |
228 |
Q |
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| T |
11960445 |
ttatgactatccctgaaactagcaagattttttccactgccacttcgccacacaccaccgctgccaaaccacaaacaactcttgggaaaacacatacaaa |
11960346 |
T |
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| Q |
229 |
tccagcattgttgtcaaaatacacttccaagttttttcatcaccaacaaacacaatcaattttccttttgcaccaaattatattggtttattattgtctt |
328 |
Q |
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| T |
11960345 |
tccagcattgttgtcaaaatacacttccaagttttttcatcaccaacaaacacaaacaattttccttttgcaccaaattatattggtttattattgtctt |
11960246 |
T |
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| Q |
329 |
tttgagaagcttcaaaatataacattataattttacagagaacaagtgattcctcatcatt |
389 |
Q |
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| T |
11960245 |
tttgagaagcttcaaaatataacattataattttacagagaacaagtgattcctcatcatt |
11960185 |
T |
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