View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_high_24 (Length: 249)
Name: NF2906_high_24
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 8162854 - 8162750
Alignment:
| Q |
82 |
tgggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagc |
181 |
Q |
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| T |
8162854 |
tgggaacatccatgattttctgaatcttttttggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagc |
8162755 |
T |
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| Q |
182 |
atagt |
186 |
Q |
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||||| |
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| T |
8162754 |
atagt |
8162750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 7316951 - 7317101
Alignment:
| Q |
83 |
gggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagca |
182 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |||| ||||| || ||||||||| | |||||||| |
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| T |
7316951 |
gggaacatccatgattttctgaatcttttttggcgttgcccctgaaaaataagagaaaaacat-cacataagttcagctgttgaagaatgcaacaaagca |
7317049 |
T |
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| Q |
183 |
tagtnnnnnnngtaatttggaaagaatcatactatcaagtcctagttgattg |
234 |
Q |
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|||| | |||| ||||||||||||||||||||| |||||||||||| |
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| T |
7317050 |
tagtaataaaagcaattaggaaagaatcatactatcaaggcctagttgattg |
7317101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 7219104 - 7219026
Alignment:
| Q |
82 |
tgggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagt |
160 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||||||||||||||| ||||||||| |
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| T |
7219104 |
tgggaacatccatgattttcagaatcttttttggcattgcccctgaaaaataagagaaaaacatgcacataagttgagt |
7219026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 7244522 - 7244484
Alignment:
| Q |
196 |
aatttggaaagaatcatactatcaagtcctagttgattg |
234 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| |
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| T |
7244522 |
aattaggaaagaatcatactatcaaggcctagttgattg |
7244484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 7323840 - 7323878
Alignment:
| Q |
196 |
aatttggaaagaatcatactatcaagtcctagttgattg |
234 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| |
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| T |
7323840 |
aattaggaaagaatcatactatcaaggcctagttgattg |
7323878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 8162731 - 8162697
Alignment:
| Q |
200 |
tggaaagaatcatactatcaagtcctagttgattg |
234 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
8162731 |
tggaaagaatcatactatcaaggcctagttgattg |
8162697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 8163201 - 8163171
Alignment:
| Q |
36 |
cacaagctattagagaaataggatagtcaaa |
66 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8163201 |
cacaagctattagagaaataggatagtcaaa |
8163171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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