View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_high_25 (Length: 248)
Name: NF2906_high_25
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 18905121 - 18905225
Alignment:
| Q |
105 |
tccaattgacatcacataacataacaacaaaccacaaaaattccaattgannnnnnnncc-ttctggcatcatcattttgttgaagtagaaacaagatca |
203 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||| |
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| T |
18905121 |
tccaattgacatcgcataacataacaacaaagcacaaaaatttcaattgattttttttcccttctg-catcatcattttgttgaagtagaaacaagatca |
18905219 |
T |
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| Q |
204 |
tcctta |
209 |
Q |
| |
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|||||| |
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| T |
18905220 |
tcctta |
18905225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 11938553 - 11938515
Alignment:
| Q |
171 |
catcatcattttgttgaagtagaaacaagatcatcctta |
209 |
Q |
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| T |
11938553 |
catcatccttttgttgaagtagaaacaagatcatcctta |
11938515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 43899711 - 43899812
Alignment:
| Q |
105 |
tccaattgacatcacataacataacaacaaaccacaaaaattccaattga-nnnnnnnnccttctggcatcatcattttgttgaagtagaaacaagatca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
43899711 |
tccaattgacatcacataacataacaacaaagcacaaaaattccaattgattttttttcccttct-gcatcatcatt---ttgaagtagaaacaagatca |
43899806 |
T |
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| Q |
204 |
tcctta |
209 |
Q |
| |
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|||||| |
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|
| T |
43899807 |
tcctta |
43899812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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