View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_high_26 (Length: 247)
Name: NF2906_high_26
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 25633329 - 25633084
Alignment:
| Q |
1 |
tcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgcattcaatcatcgtttttct-tgtgttac-----tctgtctttggt |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||| |
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| T |
25633329 |
tcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgcattcaatcatcgtttttctgtgtttcacgatcctctgtctttggt |
25633230 |
T |
|
| Q |
95 |
tcgattgaattcaactttgatcgttcgttgattctttgtttcttcttgaaatttgattgaattcttcttcactttgtgattttcacatcgtattggtgtg |
194 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25633229 |
tcgattgaattcaactttgatcgttcattgattctttgtttcttcttgaaatttgattgaattcttcttcactttgtgattttcacatcgtattggtgtg |
25633130 |
T |
|
| Q |
195 |
aattttttgttgattgttcgggaacctttaattttgttcttctgtg |
240 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
25633129 |
aattttttgttgattgttcgggaatcttcaattttgttcttctgtg |
25633084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 11922345 - 11922389
Alignment:
| Q |
156 |
ttcttcttca-ctttgtgattttcacatcgtattggtgtgaattt |
199 |
Q |
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|||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
11922345 |
ttcttcttcatctttgtgattttcgcatcatattggtgtgaattt |
11922389 |
T |
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