View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_high_4 (Length: 444)
Name: NF2906_high_4
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 30727013 - 30726920
Alignment:
| Q |
141 |
tttttggagcatatgattctagaactttaatcacttggaaaacttaaacagtgatattcatttgattactccactaaaattgtttgcctagtag |
234 |
Q |
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| T |
30727013 |
ttttaggatcatatgattccaagaatttaatcacttggaaaacttaaacatcgatgtccatttgattacgccactaaaactgttttcccagtag |
30726920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 501639 - 501673
Alignment:
| Q |
328 |
aaatgtaaaaaacaagaattacaaaataatttccc |
362 |
Q |
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| T |
501639 |
aaatgtaaaaaacaagaattacaaaataatttccc |
501673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 331
Target Start/End: Original strand, 501535 - 501566
Alignment:
| Q |
300 |
tagctcaaggtgacaagtttgaaatacaaaat |
331 |
Q |
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| T |
501535 |
tagctcaaggtgacaagtttgaaatacaaaat |
501566 |
T |
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