View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2906_high_5 (Length: 430)

Name: NF2906_high_5
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2906_high_5
NF2906_high_5
[»] chr5 (14 HSPs)
chr5 (18-359)||(41446468-41446809)
chr5 (202-358)||(41433938-41434094)
chr5 (40-166)||(41433763-41433889)
chr5 (204-286)||(31113391-31113473)
chr5 (204-286)||(5123500-5123582)
chr5 (206-279)||(36212960-36213033)
chr5 (204-286)||(10591984-10592066)
chr5 (204-275)||(18244652-18244723)
chr5 (214-292)||(18909313-18909391)
chr5 (204-276)||(22188000-22188070)
chr5 (205-276)||(29553606-29553677)
chr5 (204-245)||(2760304-2760345)
chr5 (209-273)||(14119193-14119257)
chr5 (204-276)||(32313108-32313180)
[»] chr1 (18 HSPs)
chr1 (212-286)||(24801438-24801512)
chr1 (204-272)||(15642526-15642594)
chr1 (216-277)||(32883561-32883622)
chr1 (204-292)||(7242809-7242897)
chr1 (203-275)||(22022188-22022260)
chr1 (204-276)||(42297444-42297516)
chr1 (204-248)||(49071672-49071716)
chr1 (204-275)||(9639559-9639630)
chr1 (216-279)||(13546490-13546553)
chr1 (186-273)||(12035620-12035703)
chr1 (198-276)||(33059722-33059800)
chr1 (206-272)||(44913180-44913246)
chr1 (203-276)||(33721007-33721080)
chr1 (203-276)||(36806678-36806751)
chr1 (204-272)||(10367575-10367643)
chr1 (204-276)||(16756149-16756221)
chr1 (205-276)||(9780992-9781063)
chr1 (213-292)||(40019292-40019370)
[»] chr8 (13 HSPs)
chr8 (203-276)||(36994501-36994574)
chr8 (204-286)||(4125026-4125108)
chr8 (204-275)||(7839255-7839326)
chr8 (204-286)||(2743990-2744072)
chr8 (209-275)||(16701386-16701452)
chr8 (204-286)||(30936061-30936143)
chr8 (207-276)||(12958090-12958159)
chr8 (204-276)||(19715727-19715800)
chr8 (204-276)||(13468747-13468819)
chr8 (204-252)||(24988590-24988638)
chr8 (214-276)||(44639050-44639112)
chr8 (206-259)||(13005682-13005735)
chr8 (204-276)||(40900821-40900893)
[»] chr3 (11 HSPs)
chr3 (204-292)||(40294663-40294751)
chr3 (209-275)||(25739155-25739221)
chr3 (204-276)||(30995967-30996039)
chr3 (204-277)||(1642672-1642745)
chr3 (204-277)||(27763787-27763860)
chr3 (214-275)||(15283139-15283200)
chr3 (203-276)||(25224766-25224839)
chr3 (203-276)||(38331195-38331268)
chr3 (205-276)||(20861315-20861386)
chr3 (204-246)||(8757441-8757483)
chr3 (206-286)||(14352615-14352694)
[»] chr4 (25 HSPs)
chr4 (204-275)||(33529325-33529396)
chr4 (204-286)||(31307068-31307150)
chr4 (203-275)||(16994158-16994230)
chr4 (204-276)||(35334100-35334172)
chr4 (204-276)||(38766156-38766228)
chr4 (213-276)||(3649057-3649120)
chr4 (213-276)||(17135163-17135226)
chr4 (204-286)||(9012327-9012409)
chr4 (203-276)||(13686668-13686742)
chr4 (204-286)||(51626308-51626390)
chr4 (203-276)||(45994589-45994662)
chr4 (204-276)||(14854672-14854744)
chr4 (204-276)||(35972410-35972482)
chr4 (213-276)||(8059037-8059100)
chr4 (213-276)||(47023469-47023532)
chr4 (214-273)||(53084963-53085022)
chr4 (198-276)||(24348742-24348820)
chr4 (213-287)||(28980665-28980739)
chr4 (211-276)||(28408554-28408619)
chr4 (204-276)||(2434626-2434698)
chr4 (203-287)||(7096152-7096236)
chr4 (204-292)||(13948594-13948682)
chr4 (226-276)||(3976641-3976691)
chr4 (204-286)||(46016206-46016288)
chr4 (212-273)||(34484258-34484318)
[»] scaffold0182 (1 HSPs)
scaffold0182 (204-286)||(26388-26470)
[»] chr7 (14 HSPs)
chr7 (204-277)||(1424639-1424712)
chr7 (214-278)||(7265325-7265389)
chr7 (204-286)||(29059862-29059944)
chr7 (204-286)||(31492160-31492242)
chr7 (200-276)||(4059691-4059767)
chr7 (204-276)||(20207564-20207636)
chr7 (205-276)||(21747043-21747114)
chr7 (204-277)||(19477252-19477324)
chr7 (214-275)||(33421523-33421584)
chr7 (197-247)||(24579449-24579499)
chr7 (204-277)||(11486746-11486819)
chr7 (204-276)||(8839283-8839355)
chr7 (204-272)||(37339735-37339803)
chr7 (232-360)||(40099302-40099430)
[»] chr6 (8 HSPs)
chr6 (213-276)||(29986815-29986878)
chr6 (203-276)||(21910272-21910344)
chr6 (204-277)||(31412188-31412261)
chr6 (205-276)||(21028845-21028914)
chr6 (205-276)||(21028982-21029051)
chr6 (204-276)||(12836899-12836971)
chr6 (203-276)||(28933205-28933278)
chr6 (215-275)||(278459-278519)
[»] chr2 (11 HSPs)
chr2 (203-278)||(5394461-5394536)
chr2 (204-275)||(17981566-17981636)
chr2 (213-276)||(2562356-2562419)
chr2 (204-359)||(7020362-7020515)
chr2 (211-292)||(38522903-38522984)
chr2 (204-275)||(17285739-17285810)
chr2 (203-262)||(26296440-26296499)
chr2 (204-286)||(42745118-42745200)
chr2 (213-262)||(32642994-32643043)
chr2 (214-279)||(40003105-40003169)
chr2 (204-252)||(25423835-25423883)
[»] scaffold0189 (1 HSPs)
scaffold0189 (206-279)||(11016-11089)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 41446468 - 41446809
Alignment:
Q  18 attagcaaccaacccatgtatgatgtatgatcagactagttgtggaggagctcaagtgtttactatttgctagaaagtgcacatggaattgcaaatgatg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  41446468 attagcaaccaacccatgtatgatgtatgatcagactagttgtggaggagctcaagggtttactatttgctagagagtgcacatggaattgcaaatgatg 41446567  T
Q  118 aatatataattatatagccagattttatcattaccaaaatgtcaagggatcgaatttggtgtaaacaaagtatcatccacgtgcatgcaactgcggagac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  41446568 aatatataattatatagccagattttatcattaccaaaatgtcaagggatcgaatttggtataaacaaagtatcatccacgtgcatgcaacagcggagac 41446667  T
Q  218 taatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaaacttgagttcgaatccgggtttttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41446668 taatctctcgagtcttgtgggacccaaatgagcggtaaactctctgtaagagttttaacattactgcatatccaaacttgagttcgaatccgggtttttg 41446767  T
Q  318 gttgagctagaagagactcatgcaatctcatataaacgctct 359  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41446768 gttgagctagaagagactcatgcaatctcatataaacgctct 41446809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 202 - 358
Target Start/End: Original strand, 41433938 - 41434094
Alignment:
Q  202 atgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaaacttgagtt 301  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  41433938 atgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaaacttgagtt 41434037  T
Q  302 cgaatccgggtttttggttgagctagaagagactcatgcaatctcatataaacgctc 358  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41434038 cgaatctgggtttttggttgagctagaagagactcatgcaatctcatataaacgctc 41434094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 41433763 - 41433889
Alignment:
Q  40 atgtatgatcagactagttgtggaggagctcaagtgtttactatttgctagaaagtgcacatggaattgcaaatgatgaatatataattatatagccaga 139  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||    
T  41433763 atgtatgatcagactagttgtggaggagctttagtgtttgctatttgctagaaagtgcacatggaattgcaaatgacgaatatatatttatatagcaaga 41433862  T
Q  140 ttttatcattaccaaaatgtcaaggga 166  Q
    |||||||||||||||||||||||||||    
T  41433863 ttttatcattaccaaaatgtcaaggga 41433889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 31113473 - 31113391
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||| ||||||  |||||| |||||||||||||| | ||||||    
T  31113473 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcat 31113391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 5123500 - 5123582
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| |||| |  |||||| |||||||||||||| | ||||||    
T  5123500 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 5123582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 36213033 - 36212960
Alignment:
Q  206 aactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacatt 279  Q
    |||||||||||| |||| ||||||  |||||||||| ||||| |||| ||||||||| ||||||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaacatt 36212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 10592066 - 10591984
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    |||||||| |||||||||| ||||||  ||||||||| |||||| |||| | ||||||| |||||||||||||| | ||||||    
T  10592066 gcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcat 10591984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 18244723 - 18244652
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||| | || ||| |||||  |||||||||||    
T  18244723 gcaactgcggagactaatctctcaagtattgtggaacccaaatgggtggaaaaatctcccaaagagttttaa 18244652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 18909313 - 18909391
Alignment:
Q  214 agactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaa 292  Q
    ||||||||| ||||||  ||||||||  ||||||||||| ||| ||||| |||||||||||||| | ||||||| ||||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaa 18909391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 22188000 - 22188070
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||  |||| | |||||||  ||||||||||||    
T  22188000 gcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactctcc--aagagttttaac 22188070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 29553677 - 29553606
Alignment:
Q  205 caactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||| ||||||||||||| |||  || |||||||||||||  ||  ||||||||| |||||||||||||    
T  29553677 caactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 2760345 - 2760304
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaa 245  Q
    |||||||| |||||||||| ||||||||||||||||| ||||    
T  2760345 gcaactgcagagactaatccctcgagtcttgtgggacgcaaa 2760304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 14119193 - 14119257
Alignment:
Q  209 tgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagtttt 273  Q
    |||||||||||||| |||||| ||| || |||| |||||||||||||| | ||| ||||| ||||    
T  14119193 tgcggagactaatccctcgagccttttgagacctaaatgagcggtaaattgtccttaagaatttt 14119257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 32313108 - 32313180
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||  |||||||||| ||||||| |||| ||||  ||||| || | ||||||||| |||||||||||||    
T  32313108 gcaactgtagagactaatccctcgagtattgtaggacttaaatgggcagcaaactctccttaagagttttaac 32313180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 24801512 - 24801438
Alignment:
Q  212 ggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    |||||||||||||| |||||||||||||| ||||||  ||||||||||||| |||||||||||||| | ||||||    
T  24801512 ggagactaatctcttgagtcttgtgggactcaaatggacggtaaactctccctaagagttttaacagtgctgcat 24801438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 15642594 - 15642526
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttt 272  Q
    ||||||||||||| ||||||||||||  |||||||||||||||| |||| ||||||||| |||||||||    
T  15642594 gcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 32883561 - 32883622
Alignment:
Q  216 actaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaaca 277  Q
    ||||||| |||||||||||||||  ||||||| |||| ||||||||| ||||||||||||||    
T  32883561 actaatccctcgagtcttgtggggtccaaatgggcggcaaactctccctaagagttttaaca 32883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 7242809 - 7242897
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaa 292  Q
    ||||||||||||||||||| ||||||| || || ||  |||||| | |||| ||||||| ||||||||||||| || |||||| |||||    
T  7242809 gcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtccaa 7242897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 22022260 - 22022188
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    |||||||||||||||||||| ||||| | |||||||||||||||| | || ||  ||||| ||||||||||||    
T  22022260 tgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaa 22022188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 42297444 - 42297516
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| ||||||  ||||| ||||||||||  ||| | ||||||| |||||||||||||    
T  42297444 gcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaac 42297516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 49071716 - 49071672
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatga 248  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  49071716 gcaactgcggagactaatctctcgagcattgtgggacccaaatga 49071672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 9639559 - 9639630
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    |||| ||||||||||||||||||||||||| | ||||||||||| |||||| | | |||  |||||||||||    
T  9639559 gcaattgcggagactaatctctcgagtcttttaggacccaaatgggcggtatattttcccaaagagttttaa 9639630  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 13546553 - 13546490
Alignment:
Q  216 actaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacatt 279  Q
    ||||||||||| | | ||||||||  |||||| |||||||||||||| ||||||||||||||||    
T  13546553 actaatctctcaatttttgtgggattcaaatgggcggtaaactctccataagagttttaacatt 13546490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 12035703 - 12035620
Alignment:
Q  186 agtatcatccacgtgcatgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagtttt 273  Q
    |||||||||||||    ||||| ||| |||||||||| ||||||  |||||||||||||||| |||| | ||||||| ||||||||||    
T  12035703 agtatcatccacg----tgcaattgctgagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttt 12035620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 33059722 - 33059800
Alignment:
Q  198 gtgcatgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||| |||  |||||||||  ||| |  ||||||||||||||||| |||| ||||||||| |||||||||||||    
T  33059722 gtgcatgcagctgtagagactaattcctcaaaccttgtgggacccaaatgggcggcaaactctccttaagagttttaac 33059800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 44913246 - 44913180
Alignment:
Q  206 aactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttt 272  Q
    |||||| |||||||||||||||||  |||||||||||| ||| |||| || |||||| |||||||||    
T  44913246 aactgcagagactaatctctcgagcattgtgggacccagatgggcggcaagctctccctaagagttt 44913180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 33721080 - 33721007
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||| |||| |||||||||||||||  ||||||||| |||||||  ||| ||||||||| |||||| ||||||    
T  33721080 tgcaattgcgaagactaatctctcgaaccttgtgggatccaaatggacggcaaactctccctaagagatttaac 33721007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 36806751 - 36806678
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||| |||||||||| ||||||  |||||| ||||||||| |||| | || |||| |||||||||||||    
T  36806751 tgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaac 36806678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 10367643 - 10367575
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttt 272  Q
    ||||||||||||| |||||  |||||  |||| ||||||||||| |||||| ||||||| |||||||||    
T  10367643 gcaactgcggagattaatccttcgagcattgttggacccaaatgggcggtagactctccttaagagttt 10367575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 16756221 - 16756149
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||  ||  |  |||||| |||||||||||||    
T  16756221 gcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaac 16756149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 9780992 - 9781063
Alignment:
Q  205 caactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||| |||| ||||||| ||||||  |||||||||||||||| ||||   ||||||| |||||||||||||    
T  9780992 caactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaac 9781063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 40019370 - 40019292
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaa 292  Q
    ||||||||||||| |||| |||||||||  ||||||| |  |||||||||  |||||||||||| || ||||||||||||    
T  40019370 gagactaatctcttgagttttgtgggacttaaatgagtgc-aaactctccccaagagttttaacgttgctgcatatccaa 40019292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 36994501 - 36994574
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||| || | ||||||||| |||||||||||||    
T  36994501 tgcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaac 36994574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 4125026 - 4125108
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| |||| |  |||||| |||||||||||||| | ||||||    
T  4125026 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcat 4125108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 7839255 - 7839326
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| |||| |  |||||| ||||||||||||    
T  7839255 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaa 7839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 2744072 - 2743990
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||  ||  |  |||||| |||||||||||||| | ||||||    
T  2744072 gcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcat 2743990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 16701386 - 16701452
Alignment:
Q  209 tgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    |||||||||||||||||||| ||||||||||| |||||| ||   ||||||||| |||||| |||||    
T  16701386 tgcggagactaatctctcgaatcttgtgggactcaaatgggctacaaactctccctaagaggtttaa 16701452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 30936143 - 30936061
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| |||||   |||| ||||||||||| |||| |  |||||| ||||||||||||| || ||||||    
T  30936143 gcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcat 30936061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 12958090 - 12958159
Alignment:
Q  207 actgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||| ||||||  |||||||||||||||| |||  |  |||||| |||||||||||||    
T  12958090 actgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaac 12958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 19715727 - 19715800
Alignment:
Q  204 gcaactgcggagactaatctc-tcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| | |||||  |||||||||||||||| |||| || |||||| | |||||||||||    
T  19715727 gcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaac 19715800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 13468747 - 13468819
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||||  |||||  ||||||||| |||||| |||| | ||||||  |||||||||||||    
T  13468747 gcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaac 13468819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 24988638 - 24988590
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcgg 252  Q
    |||| |||||||||||||| ||||||| ||||||||| |||||||||||    
T  24988638 gcaattgcggagactaatccctcgagtattgtgggactcaaatgagcgg 24988590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 44639112 - 44639050
Alignment:
Q  214 agactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||| | ||| ||||||| | |||||| |||| ||||||||| |||||||||||||    
T  44639112 agactaatctcccaagtattgtggggctcaaatgtgcggcaaactctccctaagagttttaac 44639050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 13005682 - 13005735
Alignment:
Q  206 aactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactc 259  Q
    ||||||||||||| |||||| ||| ||||||||||| |||||  ||||||||||    
T  13005682 aactgcggagactgatctcttgagccttgtgggacctaaatggacggtaaactc 13005735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 40900893 - 40900821
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||| ||||||||||||||| ||||  |||||||||| ||||||  ||| |||  |||| |||||||||||||    
T  40900893 gcaattgcggagactaatctgtcgaaccttgtgggactcaaatggacggaaaaaactccttaagagttttaac 40900821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 40294751 - 40294663
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaa 292  Q
    |||||||||||||||||||  |||||| ||||||||  ||||||||||| || || ||| ||||||||||||||||  |||||||||||    
T  40294751 gcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaa 40294663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 25739221 - 25739155
Alignment:
Q  209 tgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    ||||||||||||| | ||||||||| ||||||||||||| |||| ||||||||| ||||||||||||    
T  25739221 tgcggagactaatttatcgagtcttatgggacccaaatgggcggaaaactctccctaagagttttaa 25739155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 30995967 - 30996039
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| ||||||  |||||||||||| ||| |||| | ||||||| |||||||||||||    
T  30995967 gcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaac 30996039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 1642745 - 1642672
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaaca 277  Q
    ||||||||||| ||||||| ||| ||| ||||||||||||||||  ||||| ||||||| ||| ||||||||||    
T  1642745 gcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaaca 1642672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 27763860 - 27763787
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaaca 277  Q
    ||||||||||||||||||| ||||||  ||||||||| ||||||  ||| | ||||||| ||||||||||||||    
T  27763860 gcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaaca 27763787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 15283200 - 15283139
Alignment:
Q  214 agactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    ||||||||||||||||  |||||||||||||||| |||| || || ||| ||||||||||||    
T  15283200 agactaatctctcgagcattgtgggacccaaatgggcggcaatctttccataagagttttaa 15283139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 25224839 - 25224766
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||||| || |||  |||||||||| ||||| |||| ||  ||||| |||||||||||||    
T  25224839 tgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaac 25224766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 38331268 - 38331195
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||||| ||| |   |||||||||||||||| |||| || |||||  |||||||||||||    
T  38331268 tgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaac 38331195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 20861386 - 20861315
Alignment:
Q  205 caactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||| ||||||  || ||| ||||||||| |||| |  |||||| |||||||||||||    
T  20861386 caactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaac 20861315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 8757483 - 8757441
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaat 246  Q
    ||||||||||||||||||| ||||||  |||||||||||||||    
T  8757483 gcaactgcggagactaatccctcgagcattgtgggacccaaat 8757441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 14352694 - 14352615
Alignment:
Q  206 aactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||| ||||||| ||| || | |||||||  ||  || ||||||||||||||||||||| | ||||||    
T  14352694 aactgcggagactaatccctcgagtattg-ggtatccaaatggacgacaagctctccgtaagagttttaacactgctgcat 14352615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 33529396 - 33529325
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||| |||| || |||||| ||||||||||||    
T  33529396 gcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 31307068 - 31307150
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| |||| |  |||||| |||||||||||||| | ||||||    
T  31307068 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 31307150  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 16994230 - 16994158
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||| || | ||||||||| | ||||||||||    
T  16994230 tgcaactgcggagactaatcactcgagtcttgtggaacctaaatgggcagcaaactctcctttagagttttaa 16994158  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 35334100 - 35334172
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| ||||   ||||||  |||||||||||||    
T  35334100 gcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaac 35334172  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 38766228 - 38766156
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| ||||||  ||||| |||||||||| |||| | ||||||| |||||||||||||    
T  38766228 gcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaac 38766156  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 3649057 - 3649120
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||  |||||||||||| || |||||||||||| ||||||||| |||||||||||||    
T  3649057 gagactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaac 3649120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 17135226 - 17135163
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||| |||||||||| |||||| |||||| |||| ||||||||| |||||||||||||    
T  17135226 gagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaac 17135163  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 9012409 - 9012327
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||||||  ||||||||||||| || |||| || |||||| ||||||||| |||| | ||||||    
T  9012409 gcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcat 9012327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 13686742 - 13686668
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactct-ccgtaagagttttaac 276  Q
    |||||||| |||||||||||||||||| |||||| ||||||||||  ||| ||||||| || |||||||||||||    
T  13686742 tgcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaac 13686668  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 51626308 - 51626390
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||||||||||   |||||||||||||||  ||| | ||||||| ||| |||||||||| | ||||||    
T  51626308 gcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctgcat 51626390  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 45994662 - 45994589
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||||||||||||  ||||| |||||||||| |||  |  |||||| |||||||||||||    
T  45994662 tgcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaac 45994589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 14854744 - 14854672
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||| |||||||||| ||||||  |||| ||||||||||| |||| || |||||| |||||||||||||    
T  14854744 gcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaac 14854672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 35972482 - 35972410
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| |||||   | |||||||||||||| |||| ||||||||| ||| |||||||||    
T  35972482 gcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaac 35972410  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 8059037 - 8059100
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||| ||| |||||||||||||||||||| | ||| |||||||  |||||||||||||    
T  8059037 gagactaatcactccagtcttgtgggacccaaatgggtggtcaactctctctaagagttttaac 8059100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 47023532 - 47023469
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||  |||||||||||||||||||||||  ||  ||||||||| |||||||||||||    
T  47023532 gagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaac 47023469  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 53084963 - 53085022
Alignment:
Q  214 agactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagtttt 273  Q
    ||||||||||||||||| |||| ||||| |||| | ||||||||||||| ||||||||||    
T  53084963 agactaatctctcgagttttgtcggacctaaataaacggtaaactctccctaagagtttt 53085022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 24348820 - 24348742
Alignment:
Q  198 gtgcatgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||| |||||| |||||||||||||| || |||| ||||| |||||||  ||| ||||||||| ||| |||||||||    
T  24348820 gtgcatacaactgtggagactaatctcttgactcttatgggatccaaatggacggcaaactctccttaaaagttttaac 24348742  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 28980739 - 28980665
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcata 287  Q
    |||||||||| |||||||||| |||||| |||||||| |  ||||| ||| |||||||||||||  |||||||||    
T  28980739 gagactaatcgctcgagtcttatgggactcaaatgagtgacaaactttccttaagagttttaacgctactgcata 28980665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 28408619 - 28408554
Alignment:
Q  211 cggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||| |||| |||||||||||||||| || ||||||| |||| ||||||||| ||||| |||||||    
T  28408619 cggaaactattctctcgagtcttgtgagatccaaatgggcggcaaactctccataagaattttaac 28408554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 2434698 - 2434626
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||| || |||| |||||| ||||| ||||| |||||||||  ||||| | |||||||||||||||    
T  2434698 gcaactgcggataccaatcactcgagccttgtaggacctaaatgagcgacaaacttttcgtaagagttttaac 2434626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 7096236 - 7096152
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcata 287  Q
    |||||||| | |||||||||||| |||  ||||  |||| ||||| ||||||| |||||| ||||||||||||| || |||||||    
T  7096236 tgcaactgtgcagactaatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgctgcata 7096152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 13948594 - 13948682
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaa 292  Q
    |||||||| |||||||||| ||||||  ||||| ||  ||||||  ||||| ||||||| |||||||||||||| | ||||||| ||||    
T  13948594 gcaactgcagagactaatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaa 13948682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 3976691 - 3976641
Alignment:
Q  226 cgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||| ||||||| |||||||| ||||| ||| |||||||||    
T  3976691 cgagtcttgtgggatccaaatgggcggtaaaatctccctaaaagttttaac 3976641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 46016288 - 46016206
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    |||||| |||||||||||   |||||  |||||||||||||||| |||| |  |||||| |||||||||||||| | ||||||    
T  46016288 gcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 46016206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 34484258 - 34484318
Alignment:
Q  212 ggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagtttt 273  Q
    |||||||| |||||||||| ||||| || |||||||  ||||||||||||| ||||||||||    
T  34484258 ggagactagtctctcgagt-ttgtgtgagccaaatggacggtaaactctccttaagagtttt 34484318  T

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Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 26470 - 26388
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    |||||||||||||||||||||||||   |||||||||||||||| |||| |  |||||| |||||||||||||| | ||||||    
T  26470 gcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 26388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 1424712 - 1424639
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaaca 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |   | |||||||  |||||||||||||    
T  1424712 gcaactgcggagactaatctctcaagtcttgtgggacccaaatgaacaagagactctcctcaagagttttaaca 1424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 7265325 - 7265389
Alignment:
Q  214 agactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacat 278  Q
    |||||||||  |||||| ||||||||||||||||||| | ||||||||| |||||||||||||||    
T  7265325 agactaatcattcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaacat 7265389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 29059944 - 29059862
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||| ||  |||||||||||||||| |||| |  |||||| |||||||||||||| | ||||||    
T  29059944 gcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 29059862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 31492242 - 31492160
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||| |||| |  |||||| |||||||||||||| | ||||||    
T  31492242 gcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcat 31492160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 4059691 - 4059767
Alignment:
Q  200 gcatgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||| |  ||||||||| ||||||||||||| ||||||||| | ||| ||||||||  |||||||||||||    
T  4059691 gcatgcaacttcatagactaatccctcgagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaac 4059767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 20207636 - 20207564
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||||||||||||| ||||||  |||| ||| ||||||| |||| || |||||| |||||||||||||    
T  20207636 gcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaac 20207564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21747043 - 21747114
Alignment:
Q  205 caactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||| ||||||||| ||||||  |||||||||||||||| | ||||  |||||| |||||||||||||    
T  21747043 caactgcgaagactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaac 21747114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 19477252 - 19477324
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaaca 277  Q
    ||||||||||||||||||| ||| ||  ||||||||||||||||  ||| || |||||| ||||||||||||||    
T  19477252 gcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaaca 19477324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 33421584 - 33421523
Alignment:
Q  214 agactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    |||||||||| |||  ||||||||||||||||||  ||| |||||||||| |||||||||||    
T  33421584 agactaatctatcggatcttgtgggacccaaatggacggcaaactctccgaaagagttttaa 33421523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 24579449 - 24579499
Alignment:
Q  197 cgtgcatgcaactgcggagactaatctctcgagtcttgtgggacccaaatg 247  Q
    |||| |||||||||| ||||||||||||||||||||| | ||| |||||||    
T  24579449 cgtgtatgcaactgcagagactaatctctcgagtcttctaggatccaaatg 24579499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 11486746 - 11486819
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaaca 277  Q
    |||||||  ||||||||||||| |||  |||||| ||||||||| |||| || |||| | ||||||||||||||    
T  11486746 gcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaaca 11486819  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 8839283 - 8839355
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||| |||||||||||||| ||||||| |||||||| | ||||  |||| | | ||||| |||||||||||||    
T  8839283 gcaattgcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaac 8839355  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 37339735 - 37339803
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttt 272  Q
    ||||||||||||||||||| ||||||  || ||||||||||||  |||| | ||||||  |||||||||    
T  37339735 gcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 360
Target Start/End: Original strand, 40099302 - 40099430
Alignment:
Q  232 ttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaaacttgagttcgaatccgggtttttggttgagctagaaga 331  Q
    ||||||||| |||||| |||| || |||||| ||||||||||||   | |||||||||||||  ||  ||||||| | || | || ||| ||||||||||    
T  40099302 ttgtgggactcaaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaaga 40099401  T
Q  332 gactcatgcaatctcatataaacgctctc 360  Q
    ||| | | | ||||||| ||| |||||||    
T  40099402 gacccgttccatctcatctaagcgctctc 40099430  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 29986878 - 29986815
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||| ||||||||||||| ||||||||| ||||||||||| |||||||||  ||||||||||||    
T  29986878 gagattaatctctcgagttttgtgggactcaaatgagcggcaaactctcctaaagagttttaac 29986815  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 21910344 - 21910272
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||||| || |||| |||||||||| |||||||||| | ||||||  |||||||||||||    
T  21910344 tgcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaac 21910272  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 31412261 - 31412188
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaaca 277  Q
    ||||||| |||||||||| |||||||  |||||| ||||||||| |||| | ||||||| ||||||||||||||    
T  31412261 gcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaaca 31412188  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21028845 - 21028914
Alignment:
Q  205 caactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||| || ||| ||||||| ||||||||| |||| ||||||||  |||||||||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactctc--taagagttttaac 21028914  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21028982 - 21029051
Alignment:
Q  205 caactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||||||||| || ||| ||||||| ||||||||| |||| ||||||||  |||||||||||||    
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactctc--taagagttttaac 21029051  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 12836899 - 12836971
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||| ||||||||||| ||| ||  |||||||||||||||| ||||  | |||||| |||||||||||||    
T  12836899 gcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaac 12836971  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 28933278 - 28933205
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    |||||||||||| |||| || ||||||  |||||| ||||||||| |||| ||||||||  ||||| |||||||    
T  28933278 tgcaactgcggatactattcactcgagcattgtggaacccaaatgggcggcaaactctctctaagaattttaac 28933205  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 278519 - 278459
Alignment:
Q  215 gactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    |||||||| || |||| |||||||||| |||||  ||| ||||||||| ||||||||||||    
T  278519 gactaatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaa 278459  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 5394536 - 5394461
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacat 278  Q
    |||||||||||||||||||| | ||||  |||||||||||||||| |||| |  |||||| |||||||||||||||    
T  5394536 tgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacat 5394461  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 17981636 - 17981566
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    ||||||||||||||||||||||||||  |||||||||||||||  |||| || |||||| ||||||||||||    
T  17981636 gcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaa 17981566  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 2562356 - 2562419
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaac 276  Q
    ||||||||| ||| |||||||||||||||||||||||||  ||||||| | |||||||| ||||    
T  2562356 gagactaatttcttgagtcttgtgggacccaaatgagcgccaaactcttcataagagttgtaac 2562419  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 359
Target Start/End: Original strand, 7020362 - 7020515
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaaacttgagttcg 303  Q
    |||||||  |||||||||| ||||||  |||| ||||||||||| |||| ||  ||||| ||||| |||||||||| ||||||  | ||| |||| ||||    
T  7020362 gcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatgcctaaa-ttgaattcg 7020459  T
Q  304 aatccgggtttttggttgagctagaagagactcatgcaatctcatataaacgctct 359  Q
    ||| |  |   |||||| ||||||||||||| | ||||||||||| ||||||||||    
T  7020460 aattcaagaccttggttaagctagaagagacccgtgcaatctcatctaaacgctct 7020515  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 38522984 - 38522903
Alignment:
Q  211 cggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcatatccaa 292  Q
    |||||||||||| |||||||||||||  || |||||| | |||||||||| |  |||||||||| || |||||||| |||||    
T  38522984 cggagactaatcactcgagtcttgtgacactcaaatgtgaggtaaactcttccgaagagttttagcactactgcatgtccaa 38522903  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 17285739 - 17285810
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaa 275  Q
    |||||||| ||||||||||  || | |||||| ||| | ||||||||||||||||||| |||||| ||||||    
T  17285739 gcaactgcagagactaatccatcaaatcttgtaggatctaaatgagcggtaaactctctgtaagaattttaa 17285810  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 26296499 - 26296440
Alignment:
Q  203 tgcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctcc 262  Q
    |||||||| |||||||||||||||||| |||||||||  ||| || |||| |||||||||    
T  26296499 tgcaactgtggagactaatctctcgagccttgtgggattcaattgggcggcaaactctcc 26296440  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 42745118 - 42745200
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacattactgcat 286  Q
    |||||||| |||||||||| |||||   |||||| ||||||||  || | | ||||||| |||||||||||||||| ||||||    
T  42745118 gcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgctgcat 42745200  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 32642994 - 32643043
Alignment:
Q  213 gagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctcc 262  Q
    |||||||||||||||||||||||||||  ||||||| | | |||||||||    
T  32642994 gagactaatctctcgagtcttgtgggattcaaatgaacagcaaactctcc 32643043  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 40003105 - 40003169
Alignment:
Q  214 agactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacatt 279  Q
    ||||||||||||||||  || || ||  |||||||||| |||||||||| ||||||||||||||||    
T  40003105 agactaatctctcgagctttatgagattcaaatgagcgataaactctcc-taagagttttaacatt 40003169  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 25423883 - 25423835
Alignment:
Q  204 gcaactgcggagactaatctctcgagtcttgtgggacccaaatgagcgg 252  Q
    |||||||| |||||||||| ||||||  |||||||||||||||| ||||    
T  25423883 gcaactgctgagactaatccctcgagcattgtgggacccaaatgggcgg 25423835  T

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Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 11089 - 11016
Alignment:
Q  206 aactgcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctccgtaagagttttaacatt 279  Q
    ||||| ||||| |||||| |||||| |||||  ||| ||||| |||| ||||||||||||||||||||||||||    
T  11089 aactgtggagattaatctatcgagttttgtgaaacctaaatgggcggcaaactctccgtaagagttttaacatt 11016  T

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