View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_high_6 (Length: 421)
Name: NF2906_high_6
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 41709309 - 41709712
Alignment:
| Q |
1 |
taaacttagttctcctagcaacatttagtcagcactcatttcagtgaagaaaactggacccatttcctgttcagtatagaaaaatgacagcttgtatgac |
100 |
Q |
| |
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|||||||||||| | | |||||||| | |||||| ||| | |||| |||||||||||||||| || |||||||||||||||| ||| ||||||||||| |
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| T |
41709309 |
taaacttagttcacttgtcaacattttgacagcacccatattagtgtagaaaactggacccatatcgtgttcagtatagaaaactgaacgcttgtatgac |
41709408 |
T |
|
| Q |
101 |
gtgtttgtccaatatcagatgcccgtgttacaattttctgcggtcccgacaccaatataacgaatacaaaatttcactatagcaatgagtagatctgctc |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41709409 |
gtgcttgtccaatatcagatgcccgtgttacaattttctgcagttccgacaccaatatatcgaatacaaaatttcactatagcaatgagtagatctgctc |
41709508 |
T |
|
| Q |
201 |
agtggagtgggctaagattaggaactaatctataatatgatgatcgaattccatgattgtaagttcattccatttaggataacgatcaggcatttgnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
41709509 |
agtggagtgggctaagattaggaactaatctataatttgatgatcgaattccatcattgtaagttcattccatttaggataacgatcgggcatttggttt |
41709608 |
T |
|
| Q |
301 |
nnnacacatctcattatttaaaaccatatatcaccccttttatcataagctgaatcgataactaagtttaactgtccannnnnnngataaaatgtatata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41709609 |
tttacacatctcattatttaaaaccatatatcaccccttttatcataagctgaatcgataactaagtttaactgtccatttttttgataaaatgtatata |
41709708 |
T |
|
| Q |
401 |
agct |
404 |
Q |
| |
|
|||| |
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| T |
41709709 |
agct |
41709712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 378
Target Start/End: Complemental strand, 14111682 - 14111367
Alignment:
| Q |
76 |
atagaaaaatgacagcttgtatgacgtgtttgtccaatatcagatgcccgtgttacaattttctgcggtcccgacaccaatataacgaatacaaaatttc |
175 |
Q |
| |
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|||||||| ||| |||||||||| ||| || |||||||||||||||| ||||||||||||| || ||| ||||| |||||| ||| ||||||||||||| |
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| T |
14111682 |
atagaaaactgaacgcttgtatgatgtgcttatccaatatcagatgcctgtgttacaattttatgaggttccgaccccaatacaacaaatacaaaatttc |
14111583 |
T |
|
| Q |
176 |
actatagcaatgagtagatctgctc-------------agtggagtgggctaagattaggaactaatctataatatgatgatcgaattccatgattgtaa |
262 |
Q |
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||||||| |||||||||| ||||| | |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |
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| T |
14111582 |
actataggtatgagtagatttgctccacccaaaatgggactggagtgggctaagattatgaactcatttataatatgatgatcgaattccatgattgtaa |
14111483 |
T |
|
| Q |
263 |
gttcattccatttaggataacgatcaggcatttgnnnnnnnacacatctcattatttaaaaccatatatcaccccttttatcataagctgaatcgataac |
362 |
Q |
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||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
14111482 |
gttaataatatttaggataacgaacaggcatttgtttttttacacatctcattatttaaaaccatacatcacaccttttgtcataagctgaatcgataac |
14111383 |
T |
|
| Q |
363 |
taagtttaactgtcca |
378 |
Q |
| |
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|||||||||||||||| |
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|
| T |
14111382 |
taagtttaactgtcca |
14111367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 32182976 - 32182944
Alignment:
| Q |
248 |
attccatgattgtaagttcattccatttaggat |
280 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
32182976 |
attccatgattataagttcattccatttaggat |
32182944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 13230419 - 13230451
Alignment:
| Q |
248 |
attccatgattgtaagttcattccatttaggat |
280 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
13230419 |
attccatgattataagttcattccatttaggat |
13230451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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