View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2906_high_7 (Length: 416)
Name: NF2906_high_7
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 56 - 409
Target Start/End: Complemental strand, 41446926 - 41446573
Alignment:
| Q |
56 |
gagaaaaatataataacatagtatttgacttttatttatccatttacatctactattacaaaggctaaaacaaaggctaaagttattgtactcaactttt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41446926 |
gagaaaaatataataacatagtatttgacttttatttatccatttacatctactattacaaaggctaaatcaaaggctaaagttattgtactcaactttt |
41446827 |
T |
|
| Q |
156 |
attacctcaacaacatgttgtagatgtgtccaatgagagtgtaaggtttgttaaaataannnnnnnggatacttgttttagtttgatcaacacgtgtctt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
41446826 |
attacctcaacaacatgttgtagatgtgtccaatgagagtgtaaggtttgttgaaataatttttttggatacttgttttagtttgatcaacacgtgtcgt |
41446727 |
T |
|
| Q |
256 |
acgtgtgtcatacatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaattttgttggaacacttgactcaaatttttaataca |
355 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41446726 |
acgtctgtcatatatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaattttgttggaacacttgactcaaatttttaataca |
41446627 |
T |
|
| Q |
356 |
agtcgtacatatatcatacaactatcggacacttatccttaaggtgtctctgct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41446626 |
agtcgtacatatatcatacaactatcggacacttatccttaaggtgtctgtgct |
41446573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 41455532 - 41455418
Alignment:
| Q |
249 |
gtgtcttacgtgtgtcatacatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaattttgttggaacacttgactcaaatttt |
348 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||| | || |||| |||| |||| |
|
|
| T |
41455532 |
gtgtcgtacgtgtgtcatgtatgtttctgacac--tgattgaagga--gtgtgaaaaggaagaaaaaacaaattttgttaggacgcttgtctcagatttc |
41455437 |
T |
|
| Q |
349 |
taatacaagtcgtacatat |
367 |
Q |
| |
|
||| ||| ||||||||||| |
|
|
| T |
41455436 |
taacacatgtcgtacatat |
41455418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 41447005 - 41446968
Alignment:
| Q |
4 |
ctatgttgcatgctctctggttcttgatgactatgtag |
41 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447005 |
ctatgttgcatgctctctggttcttgatgactatgtag |
41446968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 41457007 - 41456923
Alignment:
| Q |
167 |
aacatgttgtagatgtgtccaatgagagtgtaaggtttgttaaaataannnnnnnggatacttgttttagtttgatcaacacgtg |
251 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| || |||| |||||||||| ||||||||| | ||||||| |
|
|
| T |
41457007 |
aacatgttgtagatgtgtccaaggcgagtgtaaggtttgtaaagataagtctttcggatacttgtcttagtttgaccgacacgtg |
41456923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 41457187 - 41457150
Alignment:
| Q |
4 |
ctatgttgcatgctctctggttcttgatgactatgtag |
41 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41457187 |
ctatgttgcgtgctctctggttcttgatgactatgtag |
41457150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 367
Target Start/End: Original strand, 16419303 - 16419437
Alignment:
| Q |
222 |
ggatacttgttttagtttgatcaacacgtgtcttacgtgtgtcatacatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaat |
321 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||| |||||||||||| ||| ||| ||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
16419303 |
ggatacttgtcttagtttgaccgacacgtgtcgtacgtgtgtcatgcat---------acattgattgaagga--gtgcgaaaaggaagaaaaaacaaat |
16419391 |
T |
|
| Q |
322 |
tttgttggaacacttgactcaaatttttaatacaagtcgtacatat |
367 |
Q |
| |
|
|| ||||| ||||||| ||||||||| ||| ||| ||||||||||| |
|
|
| T |
16419392 |
ttcgttgggacacttgtctcaaatttctaacacatgtcgtacatat |
16419437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University