View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_high_8 (Length: 415)
Name: NF2906_high_8
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 37 - 398
Target Start/End: Original strand, 41490649 - 41491011
Alignment:
| Q |
37 |
ctttaagcttactttcttaacctctttaaagtggacttataggaaaattgcttaacttaattttctcttattattaaaatagattatatacaagcacnnn |
136 |
Q |
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| T |
41490649 |
ctttaagcttactttcttaacctctttaaagtggacttataggaaaattgcttaacttaattttctcttattattaaaatagattatatacgagcacttt |
41490748 |
T |
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| Q |
137 |
nnnnagggtttatatataatcaattatgatgataattgtggagctgcaaattagttatttattcaaacatggttttgccaatttattcgcccattatcta |
236 |
Q |
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| T |
41490749 |
ttttagggtttatatataatcaattatgatgataattgtggagctgcaaattagttatttattcaaacatggttttgccaatttattcgcccattatcta |
41490848 |
T |
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| Q |
237 |
tacacttctaattctacnnnnnnnnccttatcattgagatctatcaaacaaacaccatttaacattcaagtcatttaagct-aaaataagtggtggggta |
335 |
Q |
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| T |
41490849 |
tacacttctaattctactattttttccttatcattgagatctatcaaacaaaaaccatttaagattcaagtcatttaagctaaaaataagtggtggggta |
41490948 |
T |
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| Q |
336 |
caaaccggcgaaaggcgacagggacgattccggcacgatattcagcgattttaaggaacatag |
398 |
Q |
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| T |
41490949 |
caaaccggcgaaaggctacagggacgattccggcacgatattcagcgattttaaggaacatag |
41491011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 22313953 - 22314001
Alignment:
| Q |
350 |
gcgacagggacgattccggcacgatattcagcgattttaaggaacatag |
398 |
Q |
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| T |
22313953 |
gcgacggggacgattccggcacgatattgagcgatcttaaggaacatag |
22314001 |
T |
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