View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_11 (Length: 413)
Name: NF2906_low_11
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 25633588 - 25633788
Alignment:
| Q |
1 |
gatataattaattgattcttaaatttagatatttgtttattaattctttaatgtttttagtttatgtgtctcactgtgtttaataacattcccaattatt |
100 |
Q |
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| T |
25633588 |
gatataattaattgattctgaaatttagatatttgtttattaattctttaatgtttttagtttatgtgtctcactgtgtttaataa-------------- |
25633673 |
T |
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| Q |
101 |
ataacactccaattgttgatgtggacttagttttccgttggcgtttccatgtaatttaatgcagcaaattgattctgaactgtttgtgcctcctcggcct |
200 |
Q |
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| T |
25633674 |
----cactccaattgttaatgtggacttagttttcctttggtttttccatgtaatttaatgcagcaaattgattctgaactgtttgtgcctcctcggcct |
25633769 |
T |
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| Q |
201 |
cctatttacttcggtgacg |
219 |
Q |
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| T |
25633770 |
cctatttacctcggtgacg |
25633788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 310 - 400
Target Start/End: Original strand, 25633835 - 25633927
Alignment:
| Q |
310 |
gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatat--acataaaatgacgagtttcttgtgaaaaatgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25633835 |
gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatatacacataaaatgacgagtttcttgtgaaaaatgt |
25633927 |
T |
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