View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_13 (Length: 394)
Name: NF2906_low_13
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 31181420 - 31181087
Alignment:
| Q |
12 |
atgagaatgggctagagaaatgtgagattgaaacaacaagcagtggcaagtagtagaaaattagaccaacatgcatcataaaattctcacatgtatggta |
111 |
Q |
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| T |
31181420 |
atgaaaatgggctagagaaatgtgagattgaaacaacaagcagtagcacgtagtagaaaattagaccaacatgcatcataaaattctcacatgtatggta |
31181321 |
T |
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| Q |
112 |
taataatttcaatcactatattggatcataatacaaaacaataagatagggttattaaatgactacaatgttcagaaagttcatgattaaaaatcaacat |
211 |
Q |
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| T |
31181320 |
tgataatttcaatcactatattggatcataatacaaaacaataagatagggttattaaatgactaaaatgttcagaaagttcatgattaaaaatcaacat |
31181221 |
T |
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| Q |
212 |
ccaaatagtcaaacgagtgtgaaaccaaaactgtgtattatgttggtgtactgtgtattatgttggtgtgcacttgaagtttcgaaggttcaaaaactga |
311 |
Q |
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| T |
31181220 |
ctcaatagtcaaacgagtgtgaaaccaaaactgtgtatcatg---------------ttatgttggtgtgcacttgaagtttcgaaggttcaaaaactga |
31181136 |
T |
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| Q |
312 |
tgtgtccaggttgtttcaaacaagccagtataacaaaagactacaatca |
360 |
Q |
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| T |
31181135 |
tgtgtccaggttgtttcaaacaagccagtataacaaaagactacaatca |
31181087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 8991280 - 8991369
Alignment:
| Q |
17 |
aatgggctagagaaatgtgagattgaaacaacaagcagtggcaagtagtagaaaattagaccaacatgcatcataaaattctcacatgta |
106 |
Q |
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| T |
8991280 |
aatgggctagagaaatgtgagattgaaacaacaagcagtggcacttagtagaaaattagaccaacatgcatcataaaattctcacatgta |
8991369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 1966592 - 1966503
Alignment:
| Q |
17 |
aatgggctagagaaatgtgagattgaaacaacaagcagtggcaagtagtagaaaattagaccaacatgcatcataaaattctcacatgta |
106 |
Q |
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| T |
1966592 |
aatgggctagagaaatgtgaggttgaaacaacaagcagtggcacttagtagaaaattagaccaacatgcatcataaaattctcacatgta |
1966503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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