View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_14 (Length: 390)
Name: NF2906_low_14
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 41447226 - 41446836
Alignment:
| Q |
1 |
atgcctgaatatctcgtctccatgtgatcttgtcacttttatatctatcaactaataaaattgtcaatcagtcatcatataaatttatatacaccttgta |
100 |
Q |
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| T |
41447226 |
atgcctgaatatctcgtctgcatgtgatcttgtcacttttatatctatcaactaataaaattgtcaatcagtcatcatataaatttatatacaccttgta |
41447127 |
T |
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| Q |
101 |
ctttcctacttatttgcaaggaagacttggacagagaaagagtcaggagaaaattagtagcctagaaaactttatgtacaacattagttaagttaaaatc |
200 |
Q |
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| T |
41447126 |
ctttcctacttatttgcaaggaagacttagacagagaaagagtcaggagaaaattagtagcctagataactttatgtacaacattagttaagttaaaatc |
41447027 |
T |
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| Q |
201 |
aattaggaatgtcgtaggggttagaaatttttggcatcagaattgacttatatgcaacaactttgtcaaatatagaaattattaagacttataatatatt |
300 |
Q |
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| T |
41447026 |
aattaggaatgtcgtaggggttagaaatttttggcatcagaattgacttatatgcaacaactttgtcaaatatagaaattattaagacttatgatatatt |
41446927 |
T |
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| Q |
301 |
agtt-taatgtttatagattcattgaatatacatggtgtcctgattttgacttttccatttcagaatttttggtccatttagtttatactt |
390 |
Q |
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| T |
41446926 |
agttgtaatgtttatagattcattgaatatacatggtgtcctgattttgacctttccatttcagaatttttggtccatttagtttatactt |
41446836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 304
Target Start/End: Complemental strand, 41434486 - 41434185
Alignment:
| Q |
3 |
gcctgaatatctcgtctccatgtgatcttgtcacttttatatctatcaactaataaaattgtcaatcagtcatcatataaatttatatacaccttgtact |
102 |
Q |
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| T |
41434486 |
gcctgaatatttcatctccatgtgatcttgtcacttgtatatctatcagctaataaaattgccaatcagtcttcatataaatttatatatgccttgtact |
41434387 |
T |
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| Q |
103 |
ttcctacttatttgcaaggaagacttggacagagaaagagtcaggagaaaattagtagcctagaaaactttatgtacaacattagttaagttaaaatcaa |
202 |
Q |
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| T |
41434386 |
ttcctacttatttgcaaggaaaactttgacagagaaagagtcaagagaaaattagtagcctagataattttatgtacaccattagttaagttaaaatcaa |
41434287 |
T |
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| Q |
203 |
ttaggaatgtcgtaggggttagaaatttttggcatcagaattgacttatatgcaacaactttgtcaaatatagaaattattaagacttataatatattag |
302 |
Q |
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| T |
41434286 |
ttaggagtgtcataggggttagaaatttttggcatcagaattgacttctatgcaacaactttgtcaaatatagaaattatgtagacttatgatatgttag |
41434187 |
T |
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| Q |
303 |
tt |
304 |
Q |
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|| |
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| T |
41434186 |
tt |
41434185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 41434168 - 41434122
Alignment:
| Q |
344 |
ttttgacttttccatttcagaatttttggtccatttagtttatactt |
390 |
Q |
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| T |
41434168 |
ttttgacttttccatttcagaaatttgtgtccatttagtttatactt |
41434122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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