View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_18 (Length: 331)
Name: NF2906_low_18
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 8311589 - 8311885
Alignment:
| Q |
9 |
agcagagatgataaagattattcttgtggccttagaaataataataccctttggatgttagcaattggtggaggcgtgtgaatctgatggtatgaagaat |
108 |
Q |
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| T |
8311589 |
agcagagatgataaagattattcttgtggccttagaaata---ataccctttggatggtagcaattggtggaggcgtgtgaatctgatggtatgaagaat |
8311685 |
T |
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| Q |
109 |
atgcagacttaatgatagaggcgtgagtttttctcagggagagagatgatataggataacgcaatttcaacgaaga-ggggtagaattaaaggatattca |
207 |
Q |
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| T |
8311686 |
atgcagacttaatgatagaggcgtgagtttttctcagggagagagatgatataggataacgcaatttcaacgaagagggggtagaattaaaggatattca |
8311785 |
T |
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| Q |
208 |
ttctttgagttttctagggatattccatgaggattagagaaggaacacgtgaagtaggacaagtatcaaaataattttgtatgagtaagaggcattagta |
307 |
Q |
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| T |
8311786 |
ttctttgagttttctagggacattccatgaggattagagaaggaacacgtgaagtaggacaagtaccaacataattttgtatgagtaagaggcattagta |
8311885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 33793622 - 33793498
Alignment:
| Q |
11 |
cagagatgataaagattattcttgtggccttagaaataataataccctttggatgttagcaattggtggaggcgtgtgaatctgatggtatgaagaatat |
110 |
Q |
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||||||||||| |||| |||||||||||||| ||||| ||| | ||||||| || |||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
33793622 |
cagagatgatatagatcattcttgtggccttggaaattatat---cttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaagaatat |
33793526 |
T |
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| Q |
111 |
gcagacttaatgatagaggcgtgagttt |
138 |
Q |
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| T |
33793525 |
gcagacttaataatagagacgtgagttt |
33793498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 33793359 - 33793310
Alignment:
| Q |
164 |
ataacgcaatttcaacgaagaggggtagaattaaaggatattcattcttt |
213 |
Q |
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||||| |||||||||| |||||||| |||||||||| ||||||||||||| |
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| T |
33793359 |
ataacacaatttcaactaagaggggaagaattaaagaatattcattcttt |
33793310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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