View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_19 (Length: 310)
Name: NF2906_low_19
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_19 |
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| [»] scaffold0522 (1 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 11312542 - 11312785
Alignment:
| Q |
18 |
acatcaactcctataaataaagaactctcatgatcactttttcacaacatcccccaacaccaacatcatttccannnnnnnnnnnnnnnnttcaaggtta |
117 |
Q |
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| T |
11312542 |
acatcaactcctataaataaagaaccctcataatcactttttcacaacatcccccaacaccaacatcatttccactctctctctctctctttcaaggtta |
11312641 |
T |
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| Q |
118 |
catcgtcttacatagaaaaatgggaaattttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaact |
217 |
Q |
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| T |
11312642 |
catcgtcttacatagaaaaatgggaaattttttagcattgttgatgctcatactccaactaacctttttcactccatttgctgaagagtttgaaacaact |
11312741 |
T |
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| Q |
218 |
cttcaagaacttgatgcttttaagccttcggttcctgttaagcc |
261 |
Q |
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| T |
11312742 |
cttcaagaacttgatgcttttaagccttcggttcctgttaagcc |
11312785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 11312805 - 11312864
Alignment:
| Q |
251 |
cctgttaagccccttaagcctcctatccctgttacccctcctacgcctattaagcctcct |
310 |
Q |
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| T |
11312805 |
cctgttaagccccttaagcctcctatccctgttacccctcctacgcctattaagcctcct |
11312864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 11312913 - 11312954
Alignment:
| Q |
269 |
cctcctatccctgttacccctcctacgcctattaagcctcct |
310 |
Q |
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| T |
11312913 |
cctcctatccctgttacccctcctacgcctattaagcctcct |
11312954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 21471492 - 21471585
Alignment:
| Q |
147 |
ttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
240 |
Q |
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| T |
21471492 |
tttttgcactgttgctacttttactccaactaccatttttcacttcatttgctgaagagtttgaaacagctctttacgaacttgatggttttaa |
21471585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 1192 - 1108
Alignment:
| Q |
156 |
tgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
240 |
Q |
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| T |
1192 |
tgttgctactcttactccaactagcatttttcacttcatttgctgaagagtttgacacagctctttacgaacttgatggttttaa |
1108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 3826 - 3919
Alignment:
| Q |
147 |
ttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
240 |
Q |
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| T |
3826 |
tttttgcactgttgctactcctactccaactagcatttttcacttcatttactgaagagtttgatacagctctttacgaacttgatggttttaa |
3919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 19262847 - 19262750
Alignment:
| Q |
149 |
ttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaagccttc |
246 |
Q |
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| T |
19262847 |
ttagcattgttgttactcttacttcaactaacctttttcactacatttgcggaagagcttgaaaccgctctttacaaaccttatggttttaagccttc |
19262750 |
T |
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