View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_2 (Length: 810)
Name: NF2906_low_2
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 749; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 1 - 793
Target Start/End: Original strand, 7304466 - 7305258
Alignment:
| Q |
1 |
atgggcagtggctcctacgagatagggtctggggagggtagatgcacgcagctttacccttacaagcagagagtttgtttgaaatatttaaacccgtaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7304466 |
atgggcagtggctcctacgagatagggtttggggagggtagatgcacacagctttacccttacaagcagagagtttgtttgaaatatttaaacccgtaac |
7304565 |
T |
|
| Q |
101 |
atcattgttacatggcaacaacctaaccgttgcgccaaggctcgccctctaaatagaatagagataatacaagaaaagaaaaatagatcagagaccaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7304566 |
atcattgttacatggcaacaacctaaccgttgcgccaaggcttgccttctaaatagaatagagataatacaagaaaagaaaaatagatcagagaccaacc |
7304665 |
T |
|
| Q |
201 |
aatgcagcaagatcggcaccactatagttttcacaggctttcaatcttccaatggcgctcaaatccacactggcatcaataggcataagcttaaaccttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7304666 |
aatgcagcaagatcggcaccactatagttttcacaggctttcgatcttccaatggcgctcaaatccacactggcatcaataggcataagcttaaaccttg |
7304765 |
T |
|
| Q |
301 |
catgagtttccttacgccttgcaagagcttccttgctccttgcaagagcttttaagatcgaaacacggccgtctgggcttggaagagaaatataaatatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7304766 |
catgagtttccttacgccttgcaagagcttccttgctccttgcaagagcttttaagatcgaaacacggccgtctgggcttggaagagaaatataaatatg |
7304865 |
T |
|
| Q |
401 |
attaccaaatctacccggacgtaggacaactttgtccatctccaaaggcctgtaaaatgagaaattgagtgaatacaatatgatgtgaagtaaaataact |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7304866 |
attaccaaatctacccggacgtaggacagctttgtccatctccaaaggcctgtaaaatgaggaattgagtgaatacaatatgatgtgaagtaaaataact |
7304965 |
T |
|
| Q |
501 |
aatcaggaaatacagatgatgaataaaaggtacctatttgttgcaccaatcacgaaaacacctttgcgttgctcagcgccttctaactcaataagcaact |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7304966 |
aatcaggaaatacagatgatgaataaaaggtaccgatctgttgcaccaatcacgaaaacacctttgcgttgctcagcgccttctaactcaataagcaact |
7305065 |
T |
|
| Q |
601 |
gaaatttcatataaatgaaaagagttatagaagtcaatatgacaatatctttcagtccaaaaactagaaactgttttacctgtttcaaaactccgtcgat |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7305066 |
gaaatttcatataaatgaaaagagttatagaagtcaatatgacaatatctttcattccaaaaactagaaactgttttacctgtttcaaaactccgtcaat |
7305165 |
T |
|
| Q |
701 |
aaccctgctaccttcattaccatgttttgatgtcaaagcatccacctgaaaatgtaaaataaataaatcttatattcaaactactaaacatat |
793 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7305166 |
aaccctgctaccttcattaccatgttttgatgtcaaagcatccacctgaaaatgtaaaataaataaatcttatattcaaactactaaacatat |
7305258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 110 - 792
Target Start/End: Original strand, 7295340 - 7296026
Alignment:
| Q |
110 |
acatggcaacaacctaaccgttgcgccaaggctcgccctctaaatagaatagagataatacaagaaaagaa-aaatagatcagagaccaaccaatgcagc |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||||||||| |||||| || | ||||| || | ||| || ||||||| |||||||||||| |
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|
| T |
7295340 |
acatggcaacaaccttaccgttgcgccaaggcccaccctctaaaaagaataaggagattacaataaccaacgaaagagcgcagagacaaaccaatgcagc |
7295439 |
T |
|
| Q |
209 |
aagatcggcaccactatagttttcacaggctttcaatcttccaatggcgctcaaatccacactggca------tcaataggcataagcttaaaccttgca |
302 |
Q |
| |
|
|||||| |||||| || |||||| ||| ||||||| |||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
7295440 |
aagatcagcaccattaaagtttttacaagctttcattcttgcaatgtcgctcaaatccacactggcatcggcatcaataggcttaagcttaaaccttgca |
7295539 |
T |
|
| Q |
303 |
tgagtttccttacgccttgcaagagcttccttgctccttgcaagagcttttaagatcgaaacacggccgtctgggcttggaagagaaatataaatatgat |
402 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| | ||||||||||| ||| || |||||||||||| |||||||||||||||||| |||| |||| ||| |
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|
| T |
7295540 |
tgagtttccttacgcctagcaagagtttccttacgccttgcaagagttttcaatatcgaaacacggtcgtctgggcttggaagagggatatgaataagat |
7295639 |
T |
|
| Q |
403 |
taccaaatctacccggacgtaggacaactttgtccatctccaaaggcctgtaaaatgagaaattgagtgaatacaatatgatgtgaagtaaaataactaa |
502 |
Q |
| |
|
|||||||||||||| | | ||||| | | |||||||| || ||||||| |||| || |||||||||||| | | | | ||||||||||||||||||| |
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|
| T |
7295640 |
taccaaatctacccagccttaggagagcactgtccatcacctcaggcctggaaaacgaaaaattgagtgaacagagcaaggtgtgaagtaaaataactaa |
7295739 |
T |
|
| Q |
503 |
tcaggaaatacagatgatgaataaaaggtacctatttgttgcaccaatcacgaaaacacctttgcgttgctcagcgccttctaactcaataagcaactga |
602 |
Q |
| |
|
||| ||||| ||| || ||| |||| |||||||| |||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
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|
| T |
7295740 |
tcatcaaatagagacgaagaaccaaagttacctattggttgcaccaatcacgaaaacacctgtccgttgctctgcgccatctaactcaataagcaactgc |
7295839 |
T |
|
| Q |
603 |
aatttcatataaatgaaaagagttatagaagtcaatatgacaatatctttcagtccaaaaactagaaactgttttacctgtttcaaaactccgtcgataa |
702 |
Q |
| |
|
|||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || || |||| |
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|
| T |
7295840 |
aattgcatgtaattgaaaagagt--aagaagtcaatatgacaatatctttcagtccaaaaactagaaactattttacctgtttcaatattctttcaataa |
7295937 |
T |
|
| Q |
703 |
cc-ctgctaccttcattaccatgttttgatgtcaaagcatccacctgaaaatgtaaaataaataaatcttatattcaaactactaaacata |
792 |
Q |
| |
|
|| ||| | ||||||| |||||||||| ||||||||||||||||| ||||||| ||| || |||||||| | |||||||||||| |||| |
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|
| T |
7295938 |
ccagtgc-atcttcattgccatgttttgttgtcaaagcatccaccttaaaatgtcaaa-aagaaaatcttaaagtcaaactactaagcata |
7296026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 526 - 614
Target Start/End: Complemental strand, 790726 - 790638
Alignment:
| Q |
526 |
aaaggtacctatttgttgcaccaatcacgaaaacacctttgcgttgctcagcgccttctaactcaataagcaactgaaatttcatataa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||||||||| || |||||||||||||||||||| |||||||||||| |
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|
| T |
790726 |
aaaggtacctatttgttgcaccaatcacaaaaacacccctccgttgctcagcaccatctaactcaataagcaactgcaatttcatataa |
790638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 790994 - 790911
Alignment:
| Q |
198 |
accaatgcagcaagatcggcaccactatagttttcacaggctttcaatcttccaatggcgctcaaatccacactggcatcaata |
281 |
Q |
| |
|
|||||| |||||||||| ||||| ||| ||||||||| || | || ||||||||||||||||||||| ||||| | ||||||| |
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|
| T |
790994 |
accaattcagcaagatcagcaccgctaaggttttcacatgcatccattcttccaatggcgctcaaatctacactagaatcaata |
790911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 545
Target Start/End: Complemental strand, 39336175 - 39336087
Alignment:
| Q |
459 |
gagaaattgagtgaat--acaatatgatgtgaagtaaaataactaatcaggaaatacagatgatgaataaaaggtacctatttgttgca |
545 |
Q |
| |
|
|||||||||| ||||| |||| ||||| ||||||||||||||||| |||| || | |||||| ||| ||||||||||||||| |||| |
|
|
| T |
39336175 |
gagaaattgattgaatgcacaacatgatatgaagtaaaataactaagcagggaaaagagatgaggaaccaaaggtacctatttggtgca |
39336087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 39336366 - 39336281
Alignment:
| Q |
198 |
accaatgcagcaagatcggcaccactatagttttcacaggctttcaatcttccaatg--gcgctcaaatccacactggcatcaata |
281 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||||| ||| || |||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
39336366 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgacacactcaaatccacgctggcatcaata |
39336281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 21333101 - 21333139
Alignment:
| Q |
114 |
ggcaacaacctaaccgttgcgccaaggctcgccctctaa |
152 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
21333101 |
ggcaacaacctcaccgttgtgccaaggctcgccctctaa |
21333139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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