View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_20 (Length: 299)
Name: NF2906_low_20
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 6360647 - 6360918
Alignment:
| Q |
18 |
ttaatggttgctgaagggtttcctttggttccgaagtctcgtaatgatgctgttgctgaaatcactggtaatcaagaggagatggaaaacgatcttgatg |
117 |
Q |
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| T |
6360647 |
ttaatggttgctgaagggtttcctttggttccgaagtctcgtagtgatgctgttgctgaaatcactggtaatcaagaggagatggaaaacgatcttgatg |
6360746 |
T |
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| Q |
118 |
agttcatgaatgtaacaaacaatctcgatatattttaacgttgtgaatagggtacaagaactaatttgtttaaataggctcttctaaagctaatgggcat |
217 |
Q |
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| T |
6360747 |
agttcatgaatgtaacaaacaatctcgatatatttcaacgttgtgaatagggtacaagaactaatttgtttaaataggctcttctaaagctaatgggcat |
6360846 |
T |
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| Q |
218 |
gattaattaaaggaatacaattgttagaaatgattacaaatatacactatttacaacacaccattgcctttg |
289 |
Q |
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| T |
6360847 |
gattaattaaaggaatacaattgttagaaataattacaaatatacactatttacaacacaccattgcctttg |
6360918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 6429860 - 6429931
Alignment:
| Q |
144 |
gatatattttaacgttgtgaatagggtacaagaactaatttgtttaaataggctcttctaaagctaatgggc |
215 |
Q |
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| T |
6429860 |
gatatatttcaaagctgtgaataggatacaagaactaatttttttaaatagactcttctatacctaatgggc |
6429931 |
T |
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