View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_22 (Length: 264)
Name: NF2906_low_22
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 41709018 - 41709255
Alignment:
| Q |
11 |
cacagatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatccagttttc |
110 |
Q |
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| T |
41709018 |
cacagatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatccagttttc |
41709117 |
T |
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| Q |
111 |
ctcaaagttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaacacagtttaaagcagattattgttttcttcaatagttatgccc |
210 |
Q |
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| T |
41709118 |
ctcaaagttaatttcttctg----------------tggagatagcttaaaatgcaacacaatttaaagcagattattgttttcttcaatagttatgccc |
41709201 |
T |
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| Q |
211 |
catgtttcttataacacaggctgcaatgtgcttagaaattgagagtgtatagac |
264 |
Q |
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| T |
41709202 |
catgtttcttataacacaggctgcaatgtgcttagaaattgagagtgtatagac |
41709255 |
T |
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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 14112498 - 14112421
Alignment:
| Q |
14 |
agatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgat |
91 |
Q |
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| T |
14112498 |
agattgcgttttaaatagtattcgcaatgataaatttccagtgatgtaattcaatatgactaagacagatgcaatgat |
14112421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 14111806 - 14111755
Alignment:
| Q |
118 |
ttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaaca |
169 |
Q |
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| T |
14111806 |
ttaacttcttctggaggagcaaaagattatggagatagcttaaaatgcaaca |
14111755 |
T |
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