View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2906_low_3 (Length: 759)
Name: NF2906_low_3
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 199 - 741
Target Start/End: Complemental strand, 9781316 - 9780774
Alignment:
| Q |
199 |
ctgaatataccaattcatatcttatcttattttcgtcttttcnnnnnnnagttagtaatttgagaatgttgaaaatcacaattttattatcttatcttct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9781316 |
ctgaatataccaattcatatcttatcttattt-cgtcttttctttttttatttagtaacttgagaatgttgaaaatcacaattttcttatcttatcttct |
9781218 |
T |
|
| Q |
299 |
atatataaaccaacaaactcactttaa-gctgagcaaataaattaagaaagaaaaatatttcaaacaaagacatattttaatttctactttgatttttcc |
397 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9781217 |
atattgaaaccaacaaactcactttaaagctcagcaaacaaattaacaaagaaaaatattccaaacaaagacatattttaatttctactttgatttttcc |
9781118 |
T |
|
| Q |
398 |
tttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgttgttgcacatattgcagaagctgatagatttggctacat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
9781117 |
tttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgttgttgcacatattgcagaagctgatagatttgccttcat |
9781018 |
T |
|
| Q |
498 |
tatttatactcttactccatgctatccttttcttctaggttcaatttcagttgctacgccacattgttgtgaagcagtgaaggaagttgatgatgacgcc |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9781017 |
tatttatactcttactccatgctatccttttcttataggttcaatttcagttgctacgccacattgttgtgaagcagtgaaggaagttgatgatgacgcc |
9780918 |
T |
|
| Q |
598 |
aaagactatgatgatcgtctagaaacttgtgactgcttgaaagatatggctctttcttttaagaaggatttcaatgttgaaaatggtgctgcactctttg |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9780917 |
aaagactatgatgatcgtctagaaacttgtgactgcttgagagatatggctctttcttttaagaaggatttcaatgttgaaaatggtgctgcactctttg |
9780818 |
T |
|
| Q |
698 |
ccttatgtggtattcaaacaccctaccagatttctcgtgatatc |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9780817 |
ccttatgtggtattcaaacaccctaccagatttctcgagatatc |
9780774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 50048215 - 50048042
Alignment:
| Q |
18 |
acttatagcaggcaaatcacacgacagaggggaagtctttggctttctgaacatgcttagactctggcgattgaggcgtgttagtgagctcttctcaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50048215 |
acttatagcaggcaaatcacacgacagaggggaagtctttggctttctgaacatgcttagactctggcgattgaggcgtgttagtgagctcttctcaagg |
50048116 |
T |
|
| Q |
118 |
tatatttctttgggatatttttgtggttataaaagacattatacgtatgttctgctatttcccacaggttctgc |
191 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50048115 |
tatatttctttaggatatttttgtggttataacagacattatacgtatgttctgctatttcccacatgttctgc |
50048042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University