View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_30 (Length: 239)
Name: NF2906_low_30
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39237747 - 39237523
Alignment:
| Q |
1 |
gatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaaagcttgaggact |
100 |
Q |
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| T |
39237747 |
gatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaaagcttgaggact |
39237648 |
T |
|
| Q |
101 |
ttgtttctggacttttgcttcctctcttttttgcaattagtggcctaaagactgacgttggcctcatcgatggtccttctacatgggcagttataatcct |
200 |
Q |
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| T |
39237647 |
ttgtttctggacttttgcttcctctcttttttgcaattagtggcctaaagactgacgttggcctcatcgatggtccttctacatgggcagttataatcct |
39237548 |
T |
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| Q |
201 |
tcttgttattttggcttgtgttggc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
39237547 |
tcttgttattttggcttgtgttggc |
39237523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 44055875 - 44055733
Alignment:
| Q |
1 |
gatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaaagcttgaggact |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||| ||||| | |||||| |||||| || |||| | |||||||||||||| | |
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| T |
44055875 |
gatgctattggaactcattctgttttcggagcttttgtgttcggtttggcaattccgaatggaccgcttggtgtttctctggtagaaaagcttgaggatt |
44055776 |
T |
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| Q |
101 |
ttgtttctggacttttgcttcctctcttttttgcaattagtgg |
143 |
Q |
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| T |
44055775 |
ttgtttcaggacttttgttacctctcttttttgccattagtgg |
44055733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2811627 - 2811779
Alignment:
| Q |
1 |
gatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaaagcttgaggact |
100 |
Q |
| |
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|||| ||||||||| |||||| ||||||| |||||||| | ||| || | ||||||| |||||||||||| ||| | ||||||||||| || |||| |
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| T |
2811627 |
gatgttattggaacacattctatttttggtgcttttgtttatggattagtgattccaaatggaccacttggagctgcaataattgaaaagctagaagact |
2811726 |
T |
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| Q |
101 |
ttgtttctggacttttgcttcctctcttttttgcaattagtggcctaaagact |
153 |
Q |
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||||||| || ||||| || ||||| |||| ||| |||||||| || |||||| |
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| T |
2811727 |
ttgtttcggggcttttactccctcttttttatgctattagtggacttaagact |
2811779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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