View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2906_low_33 (Length: 228)
Name: NF2906_low_33
Description: NF2906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2906_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 38377387 - 38377523
Alignment:
| Q |
1 |
atttatttgctttacaaaaaccgcggatatgtttacaaaaacattttttaggtannnnnnnnncttcttaaatgccaacatgctttttgagtacaaacta |
100 |
Q |
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| T |
38377387 |
atttatttgctttacaaaaaccgcggatatgtttacaaaaacattttttaggtatttttttttcttcttaaatgccaacatgctttttgagtacaaacta |
38377486 |
T |
|
| Q |
101 |
tataaaattgaaagataaaatgttacaccaaaacacg |
137 |
Q |
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| T |
38377487 |
tataaaattgaaagataaaatgttacaccaaaacacg |
38377523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 10578100 - 10578133
Alignment:
| Q |
100 |
atataaaattgaaagataaaatgttacaccaaaa |
133 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
10578100 |
atataaaattgaaagaaaaaatgttacaccaaaa |
10578133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 7047540 - 7047508
Alignment:
| Q |
102 |
ataaaattgaaagataaaatgttacaccaaaac |
134 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
7047540 |
ataaaattgaaagagaaaatgttacaccaaaac |
7047508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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