View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2907_low_2 (Length: 465)
Name: NF2907_low_2
Description: NF2907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2907_low_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 48961220 - 48960774
Alignment:
| Q |
19 |
gtggatggtattgaagagagaaataaggtgatcaacaaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961220 |
gtggatggtattgaagagagaaataaggtgatcaacaaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataa |
48961121 |
T |
|
| Q |
119 |
gacggcgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48961120 |
gacggcgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaag |
48961021 |
T |
|
| Q |
219 |
attgagagacaggaagccacttgattagttcaataactccctctttgaagaagcattgtccttgtgtggatcgtgattgtgcaacattttcccaaagact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48961020 |
attgagagacaggaagccacttgattagttcaataactccctctttgaagaagcattgtccttgtgtgtatcgtgattgtgcaacattttcccaaagact |
48960921 |
T |
|
| Q |
319 |
ctcaaatcaatgaagatcactgaagagtaactacattgctactctgacaaatttactatgaatttcagatttgtttttctcaactactttgaaatttagt |
418 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960920 |
ctcaaatcaatgaagattgctgaagagtaattacattgctactctgacaaatttactatgaatttcagatttgtttttctcaactactttgaaatttagt |
48960821 |
T |
|
| Q |
419 |
cagtaaaattattaagtttgtttcagatcatgcatattattgtcaat |
465 |
Q |
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| T |
48960820 |
cagtaaaattattaagtttgtttcagatcatgcatattattgtcaat |
48960774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 251
Target Start/End: Complemental strand, 48958037 - 48957841
Alignment:
| Q |
55 |
aaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatat |
154 |
Q |
| |
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||||||| |||||| ||||| |||| | ||| |||||||||||||||||||| || || || | || |||||||| |||||| || || ||||||| | |
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| T |
48958037 |
aaagatagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacac |
48957938 |
T |
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| Q |
155 |
gagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaa |
251 |
Q |
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|||||||||||| ||| || ||||||||||| |||||| || |||| ||||||||||||||| | ||||| || | ||| |||||||||| ||||| |
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| T |
48957937 |
gagctgttcaagaaggtggatcatctcataacaatttgttgtctttgattgatgatcttaaacaaatgagaaactgcaagacacttgattaattcaa |
48957841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 48965213 - 48965025
Alignment:
| Q |
64 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
163 |
Q |
| |
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||||||||||| ||||| | ||| |||||| ||||||||||||| || | || ||| | ||||||| ||||||||| || ||||||| | |||| ||| |
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| T |
48965213 |
atagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattc |
48965114 |
T |
|
| Q |
164 |
aagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaat |
252 |
Q |
| |
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||| ||| ||||| |||||||| |||||| | || || ||||||||||| |||||||||||||| || |||||| |||| ||| ||||| |
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| T |
48965113 |
aagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaagccaattgagtagctcaat |
48965025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 48967282 - 48967177
Alignment:
| Q |
124 |
cgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattga |
223 |
Q |
| |
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||||||||||| ||||| || ||||||| | |||| |||||| ||| |||| ||| |||||||||| || ||||| |||||||||||||||||| ||| |
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| T |
48967282 |
cgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatga |
48967183 |
T |
|
| Q |
224 |
gagaca |
229 |
Q |
| |
|
|||||| |
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| T |
48967182 |
gagaca |
48967177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 57 - 245
Target Start/End: Complemental strand, 28385225 - 28385037
Alignment:
| Q |
57 |
agataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatga |
156 |
Q |
| |
|
|||||| ||||||||||| |||| ||||| ||||||||||| |||||||| ||| |||| |||| |||||||||||||| || || ||||||| | || |
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| T |
28385225 |
agataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacga |
28385126 |
T |
|
| Q |
157 |
gctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
245 |
Q |
| |
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|||||| ||| ||| || || ||| ||||||||||| | |||||||| || || |||||||||||||||||||| || |||| |||||| |
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| T |
28385125 |
gctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta |
28385037 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 12540569 - 12540388
Alignment:
| Q |
64 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
163 |
Q |
| |
|
||||||||||| |||| | ||| ||||| |||||| ||||||| ||| |||| |||| ||||| |||||| |||| || ||||||| | ||||||||| |
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| T |
12540569 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
12540470 |
T |
|
| Q |
164 |
aagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
245 |
Q |
| |
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||| ||| || || ||||||||||||||| | |||| || || || |||||||||| |||||| | ||||||| |||||| |
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| T |
12540469 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgatta |
12540388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 13448247 - 13448083
Alignment:
| Q |
64 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
163 |
Q |
| |
|
||||||||||| || || | ||| |||||||||||||||||||| ||| |||| || | ||||||||||||||||| || || |||||| |||| ||| |
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| T |
13448247 |
atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattc |
13448148 |
T |
|
| Q |
164 |
aagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagac |
228 |
Q |
| |
|
||| ||| ||||| ||| ||||||||||| ||||||| ||||| || |||||||||| ||||||| |
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| T |
13448147 |
aagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
13448083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 13454728 - 13454557
Alignment:
| Q |
54 |
caaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctata |
153 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||| |||| ||||||||||||||| || |||| || ||||||||||||||||| || ||||||| | |
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| T |
13454728 |
caaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctaca |
13454629 |
T |
|
| Q |
154 |
tgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgaga |
225 |
Q |
| |
|
|||| ||||| ||| ||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||| |
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| T |
13454628 |
caagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgaga |
13454557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 13440090 - 13439920
Alignment:
| Q |
58 |
gataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgag |
157 |
Q |
| |
|
||||| ||||||||||| ||||| | ||| ||||| |||||||||||| || |||| || | | ||||| ||||||||| || ||||||| | || |
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| T |
13440090 |
gataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaag |
13439991 |
T |
|
| Q |
158 |
ctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagac |
228 |
Q |
| |
|
|| |||||| ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||| |
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|
| T |
13439990 |
ctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagac |
13439920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 12641775 - 12641954
Alignment:
| Q |
63 |
tatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgtt |
162 |
Q |
| |
|
||||||||| || ||||| | ||| ||||||| |||||||||||| | || || |||| ||||||| |||||||||| | ||||||| | |||||| |
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|
| T |
12641775 |
tatagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgtt |
12641874 |
T |
|
| Q |
163 |
caagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttga |
242 |
Q |
| |
|
||| |||||| || |||||||| |||||| ||||||| ||| | ||||||||||||| ||||||| | || |||||||| |
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|
| T |
12641875 |
gaagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttga |
12641954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 3417781 - 3418003
Alignment:
| Q |
23 |
atggtattgaagagagaaataaggtgatcaacaaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacg |
122 |
Q |
| |
|
||||||||| |||||||| ||| || | | || |||| | |||||||||||| |||| | ||| |||||| || ||||||| || |||| ||| |||| |
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| T |
3417781 |
atggtattggggagagaaagaagttggtgagcagagatgacatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagact |
3417880 |
T |
|
| Q |
123 |
gcgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattg |
222 |
Q |
| |
|
|||||||||||| |||| || ||||||| | ||||| |||||| ||| || || || ||| |||||||| | |||| || || || ||||||| ||| |
|
|
| T |
3417881 |
acgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttg |
3417980 |
T |
|
| Q |
223 |
agagacaggaagccacttgatta |
245 |
Q |
| |
|
|||||| | |||||||||||||| |
|
|
| T |
3417981 |
agagactgcaagccacttgatta |
3418003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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