View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2907_low_3 (Length: 252)
Name: NF2907_low_3
Description: NF2907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2907_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29037289 - 29037055
Alignment:
| Q |
1 |
tccagaaacctttttcagttgtgcggttaggccttcctccactaccatgttttttgtcccttggcacgaaaaaataccattctctttccccaacctttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29037289 |
tccagaaacctttttcagttgtgcggttaggccttcctccactaccatgttttttgtcccttggcacgaaaaaataccattctctttccccaacctttga |
29037190 |
T |
|
| Q |
101 |
caaacctattatatcatgcnnnnnnnttataatttcaataatatgatcactaaaatttcaaatttgattaatgtttacgaaaatatgtaacactaacaca |
200 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29037189 |
caaacctattatatcatgcaaaacatttataacttcaataatatgatcactaaaatttcaaatttgattaatgtttacgaaaatatgtaacactaacaca |
29037090 |
T |
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| Q |
201 |
taatatggtactagcaattgattgattagtaatat |
235 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
29037089 |
taatatggtactagcaattgattgattagcaatat |
29037055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29049425 - 29049191
Alignment:
| Q |
1 |
tccagaaacctttttcagttgtgcggttaggccttcctccactaccatgttttttgtcccttggcacgaaaaaataccattctctttccccaacctttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29049425 |
tccagaaacctttttcagttgtgcggttaggccttcctccactaccatgttttttgtcccttggcacgaaaaaataccattctctttccccaacctttga |
29049326 |
T |
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| Q |
101 |
caaacctattatatcatgcnnnnnnnttataatttcaataatatgatcactaaaatttcaaatttgattaatgtttacgaaaatatgtaacactaacaca |
200 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29049325 |
caaacctattatatcatgcaaaacatttataacttcaataatatgatcactaaaatttcaaatttgattaatgtttacgaaaatatgtaacactaacaca |
29049226 |
T |
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| Q |
201 |
taatatggtactagcaattgattgattagtaatat |
235 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
29049225 |
taatatggtactagcaattgattgattagcaatat |
29049191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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