View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2907_low_4 (Length: 248)
Name: NF2907_low_4
Description: NF2907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2907_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 4917048 - 4916850
Alignment:
| Q |
8 |
ctccgcactttagtgtgaggttgatgcacatggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaactta-gt |
106 |
Q |
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| T |
4917048 |
ctccacactttagcgtgaggttcatgctcaaggtgagtttctgcacccacaagacaaatcatgttt-agaaaataataattaacttgcttcaacttacat |
4916950 |
T |
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| Q |
107 |
ttacatatgcttttaaacctggaaatgaaagaaaaataaataaa-aaggctactgctttggtatataggaatgttttgttgaaatggtgaagttggggat |
205 |
Q |
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| T |
4916949 |
tcacatatgcttttaaacatggaaatgaaagaaaaataaataaataaggctactgctttggtatataggaatattttgttgagatggtaaagttggggat |
4916850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 4938520 - 4938417
Alignment:
| Q |
1 |
aaggaaactccgcactttagtgtgaggttgatgcacatggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaa |
100 |
Q |
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| T |
4938520 |
aaggcaactccacacttcaccgtgaggttcatgcacatggtgagtttctgcacccacaagacaaatcacgtttaacaagataataattaacttgtttcaa |
4938421 |
T |
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| Q |
101 |
ctta |
104 |
Q |
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|||| |
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| T |
4938420 |
ctta |
4938417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 4930259 - 4930119
Alignment:
| Q |
25 |
aggttgatgcacatggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaactta-gtttacatatgcttttaaa |
123 |
Q |
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| T |
4930259 |
aggttcatgctcatggcgagtttctgcacccacaagacaaatcacgtttaagaagatgataacta--tt--ttcaacttacgtttgcatatgcttttaaa |
4930164 |
T |
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| Q |
124 |
cctggaaatgaaagaaaaataaataaaaaggctactgctttggtatata |
172 |
Q |
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| T |
4930163 |
cgtggaaatgaaaggaaaa-aaat---aaggctacttctttggtatata |
4930119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 4955160 - 4955091
Alignment:
| Q |
60 |
gacaaatcatgtttaagaagataataattaacttgcttcaactta-gtttacatatgcttttaaacctggaaat |
132 |
Q |
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| T |
4955160 |
gacaaatcacgtttaagaagataa----taacttgtctcaacttacgtttacatatgtttttaaacttggaaat |
4955091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 22021522 - 22021428
Alignment:
| Q |
31 |
atgcacatggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaactta-gtttacatatgcttttaaac |
124 |
Q |
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| T |
22021522 |
atgcacatggtgagtttctgcaccaacaagacaaatcacgtttaagaagataataattaacttgtttcaacttatgtttacatatgcttttaaac |
22021428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 22010094 - 22010006
Alignment:
| Q |
37 |
atggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaactta-gtttacatatgcttttaaac |
124 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |
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| T |
22010094 |
atggtgagtttctgcaccaacaagacaaatcacgtttaagaagataataattaacttgtttcagcttatgtttacatatgcttttaaac |
22010006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 28716082 - 28715975
Alignment:
| Q |
8 |
ctccgcactttagtgtgaggttgatgcacatggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaactta-gt |
106 |
Q |
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|||| ||||| || |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||| ||| || |
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| T |
28716082 |
ctccacacttgagcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatcatgtttaagaagataatgatcaacttgtttcaagttacgt |
28715983 |
T |
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| Q |
107 |
ttacatat |
114 |
Q |
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|||||||| |
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| T |
28715982 |
ttacatat |
28715975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 44331630 - 44331536
Alignment:
| Q |
31 |
atgcacatggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaactta-gtttacatatgcttttaaac |
124 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
44331630 |
atgcacatggtgagtttctgcaccaacaagacaaatcacgtttaagaagataataattaacttgtttcaacttatgtttacatatgcttttaaac |
44331536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 44310376 - 44310288
Alignment:
| Q |
37 |
atggtgagtttctgcacccacaagacaaatcatgtttaagaagataataattaacttgcttcaactta-gtttacatatgcttttaaac |
124 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |
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| T |
44310376 |
atggtgagtttctgcaccaacaagacaaatcacgtttaagaagataataattaacttgtttcagcttatgtttacatatgcttttaaac |
44310288 |
T |
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