View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2907_low_5 (Length: 216)
Name: NF2907_low_5
Description: NF2907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2907_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 40265288 - 40265107
Alignment:
| Q |
16 |
tgaacaattcttattatcacttacgtagtttcttctcttagtaaattaataaaagaagggattcagggttccattgaaaatggtacttactttttattga |
115 |
Q |
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| T |
40265288 |
tgaacaattcttattatcacttacgtagtttcttctcttagtaaattaataaaagaagggattcagggttccattgaaaatggtacttattttttattga |
40265189 |
T |
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| Q |
116 |
ttaaaccaaaccaagaactttttctcttacattaactatcaactattaaaatataataagtgactttctccgatcataagat |
197 |
Q |
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| T |
40265188 |
ttaaaccaaaccaagaacttcttctcttacattaactatcaactattaaaatataataagtgactttctccgatcataagat |
40265107 |
T |
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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 11678110 - 11678275
Alignment:
| Q |
16 |
tgaacaattcttattatcacttacgtagtttcttctcttagtaaattaataaaagaagggattcagggttccattgaaaatggtacttactttttattga |
115 |
Q |
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||||| |||||| || |||||||||| ||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||| | |||| |
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| T |
11678110 |
tgaacgattctttctaccacttacgtaatttcttctctttgtaaattcatagaataagggattatgggttccattgaaaatggtactt------ttttga |
11678203 |
T |
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| Q |
116 |
ttaaaccaaaccaagaactttttctcttacattaactatcaactattaaaatataataagtgactttctccg |
187 |
Q |
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|| || ||||||||||||| ||||||||||| ||||||||||||||| || |||||||||||||| ||||| |
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| T |
11678204 |
ttgaattaaaccaagaacttcttctcttacatcaactatcaactattataacataataagtgacttcctccg |
11678275 |
T |
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