View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2908_high_2 (Length: 440)

Name: NF2908_high_2
Description: NF2908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2908_high_2
NF2908_high_2
[»] chr2 (6 HSPs)
chr2 (264-423)||(15874358-15874517)
chr2 (18-113)||(15872351-15872446)
chr2 (182-259)||(15872515-15872592)
chr2 (373-423)||(15874551-15874601)
chr2 (337-419)||(31066099-31066181)
chr2 (337-424)||(19554197-19554283)
[»] scaffold0485 (1 HSPs)
scaffold0485 (337-423)||(5388-5473)
[»] chr3 (1 HSPs)
chr3 (337-423)||(5824356-5824442)
[»] chr5 (2 HSPs)
chr5 (339-420)||(24876980-24877061)
chr5 (336-419)||(21143105-21143188)
[»] chr4 (1 HSPs)
chr4 (338-419)||(25982840-25982921)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 264 - 423
Target Start/End: Original strand, 15874358 - 15874517
Alignment:
Q  264 accaccagagaattaaaaagctcaaatcaatgatacgtcttcgttctccaacatcaatgtattcttcaaactcattctctctctagcctttattttgtaa 363  Q
    ||||| ||| ||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  15874358 accactagaaaattaaaaagctcaactcaacaatacgtcttcgttctctaacatcaatgtattcttcaaactcattctctctctagtctctattttgtaa 15874457  T
Q  364 acttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcac 423  Q
    |||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  15874458 acttaccaaatgatttcataaccctaatttgtgacaactactaatcttatatactctcac 15874517  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 15872351 - 15872446
Alignment:
Q  18 agtaaatctcacatattatgaataaaatgaatgtttgaagctccaaacactttctgacatgcataattgacatgcataaaccctttccctatttcc 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15872351 agtaagtctcacatattatgaataaaatgaatgtttgaagctccaaacactttctgacatgcataattgacatgcataaaccctttccctatttcc 15872446  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 15872515 - 15872592
Alignment:
Q  182 gagatatttgtaaatgtatttgcaattttaatacaacaagagattaatatgacaacaaagtaaacatttagagattaa 259  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15872515 gagatacttctagatgtatttgcaattttaatacaacaagagattaatatgacaacaaagtgaacatttagagattaa 15872592  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 15874551 - 15874601
Alignment:
Q  373 atgatttcataaccctaatttgtgactactattagtcttatatactctcac 423  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  15874551 atgatttcataaccctaatttgtgacaactactagtcttatatactctcac 15874601  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 31066099 - 31066181
Alignment:
Q  337 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactc 419  Q
    |||||||| ||||||| ||||||||||| |||||| ||||||||| | | ||| |||| |||||||| |||||||||||||||    
T  31066099 attctctcgctagcctctattttgtaaatttaccaaatgatttcacagctctagtttgcgactactactagtcttatatactc 31066181  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 424
Target Start/End: Complemental strand, 19554283 - 19554197
Alignment:
Q  337 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaca 424  Q
    |||||||||||||||| |||| ||||||||||  | || |||||| |||||||||||||||||||||  | ||||| |||||||||||    
T  19554283 attctctctctagcctctattgtgtaaacttaaaa-ataatttcacaaccctaatttgtgactactaacactcttaaatactctcaca 19554197  T

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Target: scaffold0485 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 5388 - 5473
Alignment:
Q  337 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcac 423  Q
    |||||||||||||| | || ||||||||||||| | ||||||||| ||||||||||||||||||||| | |||||||||||||||||    
T  5388 attctctctctagcttctaatttgtaaacttacaa-atgatttcacaaccctaatttgtgactactacttgtcttatatactctcac 5473  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 5824356 - 5824442
Alignment:
Q  337 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcac 423  Q
    |||||||||||||||| |||||||||||| ||||| || |||||| ||||||| ||||||||||||| ||| |||||||||| ||||    
T  5824356 attctctctctagcctctattttgtaaacctaccaaataatttcacaaccctactttgtgactactactaggcttatatactttcac 5824442  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 420
Target Start/End: Complemental strand, 24877061 - 24876980
Alignment:
Q  339 tctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactct 420  Q
    ||||||||||||||  | |||||||||||  || ||||||||| ||||||| |||| |||||||| ||||||||||||||||    
T  24877061 tctctctctagcctccaatttgtaaacttgacaaatgatttcacaaccctagtttgggactactactagtcttatatactct 24876980  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 419
Target Start/End: Complemental strand, 21143188 - 21143105
Alignment:
Q  336 cattctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactc 419  Q
    ||||||||||||| | | || | |||||||||  || ||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  21143188 cattctctctctaccatctactgtgtaaacttcacaaatgatttcacaaccctagtttgtgactactactagtcttatatactc 21143105  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 25982921 - 25982840
Alignment:
Q  338 ttctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactc 419  Q
    ||||||||||||||   | |||||||||||| || ||||||||| ||||||| |||||||||  || |||||||||||||||    
T  25982921 ttctctctctagccaccaatttgtaaacttaacaaatgatttcacaaccctagtttgtgactcttactagtcttatatactc 25982840  T

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