View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2908_low_3 (Length: 383)
Name: NF2908_low_3
Description: NF2908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2908_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 24281109 - 24280737
Alignment:
| Q |
18 |
gtgtgcgtaacactgcgcatgataagttcaaaaatcgtacgcatgataagattaaaatgcattaagacattatcataacaaagaaaaaataagtatatta |
117 |
Q |
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| T |
24281109 |
gtgtgtgtaacactgcgcatgataagttcaaaaatcgtacgcatgataagattaaaatgcatcaagacatcatcatcacaaagaaaaaatacgtatatta |
24281010 |
T |
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| Q |
118 |
tggacaaattaaatcaagagtttgactaaattaaaggatgttttatttttataagtccatttgtaaacagaccttgaaagccaaggaatctacttaactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24281009 |
tggacaaattaaatcaagagtttgactaaattaaaggatgttttatttttataagtccatttgtaaacagaccttgaaagccaaggaatctaattaactc |
24280910 |
T |
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| Q |
218 |
ctaatgca-----------------ctgctgccatatgtgagactgatgtgcaaacccactatccactacccgacactggatatgttctacttgtagcat |
300 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24280909 |
ctaatgcacgcccatatttcaacgtcaactgccatatgtgagactgatgtgcaaacccactatccactacccgacactggatatgttctacttgtagcat |
24280810 |
T |
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| Q |
301 |
gctaactacgtctactttgcaatttgcaaatttattattatctccttgagtaatctttaagatctttcctttg |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24280809 |
gctaactacgtctactttgcaatttgcaaatttattattatctccttgagtaatctttaagatctttcctttg |
24280737 |
T |
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