View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2908_low_5 (Length: 229)
Name: NF2908_low_5
Description: NF2908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2908_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47710883 - 47711112
Alignment:
| Q |
1 |
aacgaaagaatcataataatgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47710883 |
aacgaaagaatcattataatgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccatatg |
47710982 |
T |
|
| Q |
101 |
aaaatgaaagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaa--gtgaatattcccattattgaagatgtaggagtgcataac |
198 |
Q |
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| T |
47710983 |
aaaatgaaagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaagtgtgaatattcccattattgaagatgtaggagtgcataac |
47711082 |
T |
|
| Q |
199 |
tatgcaaag----agtagtttagtttctga |
224 |
Q |
| |
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||||||||| ||||||||||||||||| |
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| T |
47711083 |
tatgcaaagatgtagtagtttagtttctga |
47711112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 45772717 - 45772852
Alignment:
| Q |
19 |
atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt |
118 |
Q |
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||||||||||||| ||| ||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||| |
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| T |
45772717 |
atgggaaaccaaatattactttttttgttgg-agcacttgctgttaattgtttactgtttcaaccaattttggttccatacgaaaatgaaagagttcctt |
45772815 |
T |
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| Q |
119 |
gatcttcttctgatttcaataatgctcttatggtgga |
155 |
Q |
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| T |
45772816 |
ggtcttcttctgatttccataatgctgttatggtgga |
45772852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 43306148 - 43305943
Alignment:
| Q |
19 |
atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt |
118 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
43306148 |
atgggaaaccaaagattactttttttgttgggagcacttgctgttaattatttactatttcaatcaattttggttccatatgaaaatgaaagagctcctt |
43306049 |
T |
|
| Q |
119 |
gatcttcttctgatttcaataatgctcttatggtggagaaagtgaatattcccattattgaagatgtaggagtgcataactatgcaaagagtagtttagt |
218 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||| |
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| T |
43306048 |
ggtcttcttctgatttcaataatgctgttatggtggagaaagtgaatactcccattatagaagatgtaggaatgcataaccatgcaaagagtagtttagt |
43305949 |
T |
|
| Q |
219 |
ttctga |
224 |
Q |
| |
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|||||| |
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| T |
43305948 |
ttctga |
43305943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 41828400 - 41828264
Alignment:
| Q |
19 |
atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt |
118 |
Q |
| |
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||||||||||||||||| ||||| || | |||||| ||||| ||||||||||| ||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
41828400 |
atgggaaaccaaagattacttttttttgttggagcacttgctcttaattgtttattgtttcaaccaattttggttccatacaaaaatgaaagagctcctt |
41828301 |
T |
|
| Q |
119 |
gatcttcttctgatttcaataatgctcttatggtgga |
155 |
Q |
| |
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| ||||||||||||||| |||||| | |||||||||| |
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| T |
41828300 |
ggtcttcttctgatttccataatgttgttatggtgga |
41828264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 32606622 - 32606547
Alignment:
| Q |
60 |
tgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttc |
135 |
Q |
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||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
32606622 |
tgttaattgtttactgtttcaatcaattttggttccatacgaaaatgaaagagctccttgatcttcttctgatttc |
32606547 |
T |
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