View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_high_10 (Length: 292)
Name: NF2909_high_10
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 47016722 - 47016442
Alignment:
| Q |
14 |
ttctggtaaccactttgcaagtccaaaatcacaaatctgaagaatattctcagttaatcagagtggtgaattaagtaaaataatatatagggaatttaaa |
113 |
Q |
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| T |
47016722 |
ttctggtaaccactttgcaagtccaaaatcacaaatctgaagaatattctcagttaatcagagtggtgaattaagtaaaataatatatagggaatttaaa |
47016623 |
T |
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| Q |
114 |
catatagttgtctataacatcttatatagaagttagacaaggaaaagtctattttacttatgcaggaagctgttatttcaagacttctgaaaga--nnnn |
211 |
Q |
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| T |
47016622 |
catatagtcgtctataacatcttatatagaagttagacaaggaaaagtctattttatttatgcaggaagctgttatttcaagacttctgaaagatttttt |
47016523 |
T |
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| Q |
212 |
nnnngagtaatactattcacatggctctcatatatttttccaaaagaaataattaaaattaaactataaaattaatgcaaa |
292 |
Q |
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| T |
47016522 |
ttttgagtaatactattcacatggctctcatatatttttccaaaagaaataattaaaattaaactataaaattaatgcaaa |
47016442 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 36601579 - 36601617
Alignment:
| Q |
14 |
ttctggtaaccactttgcaagtccaaaatcacaaatctg |
52 |
Q |
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| T |
36601579 |
ttctggtaaccactttgcaagtccaaaatcacaaatctg |
36601617 |
T |
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