View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_high_20 (Length: 227)
Name: NF2909_high_20
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4304472 - 4304251
Alignment:
| Q |
1 |
ttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatccattgtgatactgctaggattagtattatccatatat |
100 |
Q |
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| T |
4304472 |
ttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatccattgtgatactgctaggattagtattatccatatat |
4304373 |
T |
|
| Q |
101 |
ttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctgaacaccccgtgaaagaaagttcgtaatggatggctctagaggtat |
200 |
Q |
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| T |
4304372 |
ttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctgaacaccccgtgaaagaaagttcgtaatggatggctctagaggtat |
4304273 |
T |
|
| Q |
201 |
gctcttacgtcttcatctcact |
222 |
Q |
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|||||||||||||||| ||||| |
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| T |
4304272 |
gctcttacgtcttcatgtcact |
4304251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 208
Target Start/End: Original strand, 4249925 - 4250080
Alignment:
| Q |
53 |
ttgttgtgatccattgtgatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtag |
152 |
Q |
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||||||| | |||||||||||||| |||||| |||||||||| |||||| |||||||| |||||||||||||||| | |||||||| | ||| |||| |
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| T |
4249925 |
ttgttgttagccattgtgatactgataggatgagtattatccttatattaatcttgagttacttaggatttccatttttagcagctgctggaatatgtag |
4250024 |
T |
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| Q |
153 |
ctgaacaccccgtgaaagaaagttcgtaatggatggctctagaggtatgctcttac |
208 |
Q |
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|||||||| || |||| |||| | | | |||||||| |||||||||||||||| |
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| T |
4250025 |
ctgaacactccatgaaggaaattccaaaccagatggctccagaggtatgctcttac |
4250080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 41936326 - 41936529
Alignment:
| Q |
1 |
ttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatccattgtgatactgctaggattagtattatccatatat |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||| |||||||| |||||||||||||||||||| |
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| T |
41936326 |
ttggatattccacttccctttttggtaacatatcatactcattagtcattagttgctgtgggccattgtg----------gattagtattatccatatat |
41936415 |
T |
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| Q |
101 |
ttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctg-aacaccccgtgaaagaaagttcgtaatggatggctctagaggta |
199 |
Q |
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| ||||| ||||||||||||||| |||||||||||||||| |||| ||||||| ||||| || ||||||||||| | ||||| ||||||||||||||| |
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| T |
41936416 |
tcaatttgggttaattaggatttcaattttaaacagctgctgagatatgtagctgtaacactccatgaaagaaagtccataatgcatggctctagaggta |
41936515 |
T |
|
| Q |
200 |
tgctcttacgtctt |
213 |
Q |
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|||||||| ||||| |
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| T |
41936516 |
tgctcttatgtctt |
41936529 |
T |
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