View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2909_high_4 (Length: 557)
Name: NF2909_high_4
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 173 - 392
Target Start/End: Original strand, 32423840 - 32424055
Alignment:
| Q |
173 |
tagtttgcctgctataactgctctatgcatttttacgtagtaagcgatctcggccacagaaaaatgaactaacaatttcatataatttcaattttaacta |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32423840 |
tagtttgcctgctataactgctctatgcatttttacgtagtaggcgatctcggccacagaaaaatgaactaacaatttcatataatttcaattttaacca |
32423939 |
T |
|
| Q |
273 |
tttatttttgatcgaacggtccttatcagttactgcgttaacacataactgcgtagaatctatttcgtgatgaacaaggcaaatcctttactatgtttca |
372 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32423940 |
ttcatttttgatcgaacggtccttatcggttaatgcgttaacacataactgcgtagaatctatttcgtgatgaacaaggc----cctttactatgtttca |
32424035 |
T |
|
| Q |
373 |
cactttatgttgttttgatt |
392 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32424036 |
cactttatgttgttttgatt |
32424055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 32423712 - 32423852
Alignment:
| Q |
19 |
gaaactattttggcgatgacagattcttgtacttaaggatgagggttatgaaactcttgtatagatgcaatgtggtgacatttattcattaagaatacta |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32423712 |
gaaactattttggcgatgacagattcctgtacttaaggatgagggttatgaaactcttatatagatgcaatgtggtgacatttattcattaagaatacta |
32423811 |
T |
|
| Q |
119 |
tgggagggtgatttaatgttcctcacaatagtttgcctgct |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32423812 |
tgggagggtgatttaatgttcctcacaatagtttgcctgct |
32423852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 430 - 551
Target Start/End: Original strand, 32424085 - 32424206
Alignment:
| Q |
430 |
tactcattctctatttcaacttctttcatttcgttccttcactcaccactcacatacacataccatggcgaaccaaatcatcactcgtttcattcctaaa |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
32424085 |
tactcattctctatttcaacttctttcatttcgttccttcactcaccactcacatacacataccatggcgaaccaaatcatcactcttgtcattcctaaa |
32424184 |
T |
|
| Q |
530 |
accctaactcccttcttctctc |
551 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32424185 |
accctaactcccttcttctctc |
32424206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 494 - 551
Target Start/End: Original strand, 1542250 - 1542307
Alignment:
| Q |
494 |
atggcgaaccaaatcatcactcgtttcattcctaaaaccctaactcccttcttctctc |
551 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1542250 |
atggcgaaccaaatcatcactcgtgtcattcctaaaaccctaactcccttcttctctc |
1542307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University