View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_1 (Length: 1368)
Name: NF2909_low_1
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 315 - 838
Target Start/End: Original strand, 6994872 - 6995399
Alignment:
| Q |
315 |
aaattgaatataaataaaatgctacaaaaacagaggttattacattttatttcattctattttttaaaagataattgnnnnnnnnn---tgctgtaatta |
411 |
Q |
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| T |
6994872 |
aaattgaatattaataaaatgctacaaaaacagaggttattacattttatttcattctattttttaaaagataattgaaagaaaaaaaatgctgtaatta |
6994971 |
T |
|
| Q |
412 |
tatttttctatttttt-aaactaattcagacataaacagaataatgtgagtacctagcaagaatcccactgaaaaaagttctaatgtctccatttattaa |
510 |
Q |
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| T |
6994972 |
tatttttctatttttttaaactaattcagacataaacagaataatgtgagtacctagcaagaatcccactgaaaaaagttctaatgtctccatttattaa |
6995071 |
T |
|
| Q |
511 |
atgaataaatactaatattctcttcctctatttaaaaacattaattcagacatagtcataaacaatattnnnnnnnnnnnnntactaataacaacttaca |
610 |
Q |
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| T |
6995072 |
atgaataaatactaatattctcttcctctatttaaaaacattaattcagacatagtcataaacaatattaaaaaatgaaaaatactaataacaacttaca |
6995171 |
T |
|
| Q |
611 |
ggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcatattcatattaaaaatacattattacaagaattaattta |
710 |
Q |
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| T |
6995172 |
ggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcatattcatattaaaaatacattattacaagaattaattta |
6995271 |
T |
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| Q |
711 |
ccacttttacaaaaatgaaaattgataattgactaagaaaaccaaatagtttgcaccttggagacatctctactgagcttcctcactgtactagaaagtg |
810 |
Q |
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| T |
6995272 |
ccacttttacaaaaatgaaaattgataattgactaagaaaaccaaatagtttgcaccttggagacatctctactgagcttcctcactgtactagaaagtg |
6995371 |
T |
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| Q |
811 |
aagcattctccttcaacaacttctccta |
838 |
Q |
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| T |
6995372 |
aagcattctccttcaacaacttctccta |
6995399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 918 - 1257
Target Start/End: Original strand, 6995478 - 6995817
Alignment:
| Q |
918 |
gaaccgggtttaatttagataacggttcaagggttcagaccttatcttgttcagcaagtgcaagcttatcggcggcttcagaaagcgcagcgtggagagg |
1017 |
Q |
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| T |
6995478 |
gaaccgggtttaatttagataacggttcaagggttcagaccttatcttgttcagcaagtgcaagcttatcggcggcttcagaaagagcagcgtggagagg |
6995577 |
T |
|
| Q |
1018 |
ctctccctgagcttccagctccgcgatgagctcgtctttcttgacgagctcatcacgtagagcagaaacttctgattggagcgtgttgacacgtgttgaa |
1117 |
Q |
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| T |
6995578 |
ctctccctgagcttccagctccgcgatgagctcgtctttcttgacgagctcatcacgtagagcagaaacttctgattggagcgtgttgacacgtgttgaa |
6995677 |
T |
|
| Q |
1118 |
agggcaatggaggtgattttgcgagccacatcgagttgctcgaaaggatcggatggtagaacttgcagcaactcctcaggaatatcgaggttcgaaccac |
1217 |
Q |
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| T |
6995678 |
agggcaatggaggtgattttgcgagccacatcgagttgctcgaaaggatcggatggtagaacttgcagcaactcctcaggaatatcgaggttcgaaccac |
6995777 |
T |
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| Q |
1218 |
tcaattccgccaccaacatgttcttctctcttttttctac |
1257 |
Q |
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| T |
6995778 |
tcaattccgccaccaacatgttcttctctcttttttctac |
6995817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 6994557 - 6994763
Alignment:
| Q |
52 |
tatattatatgtaattaatttggaacatgaaaatcaataaatatatgatgaaagagttgaaagtacctccaagctgagatgtggaagtggtacttgactg |
151 |
Q |
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| T |
6994557 |
tatattatatgtaattaatttggaacatgaaaatcaataaatatatgatgaaagagttgaaagtacctccaagctgagatgtggaagtggtacttgactg |
6994656 |
T |
|
| Q |
152 |
actatgtaacatagctgcaatgttgggtgatactgctccctgcaccaaaaccatgttatatgccaaatcctcttgttaactatatatatttgaatacatt |
251 |
Q |
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| T |
6994657 |
actatgtaacatagctgcaatgttgggtgatactgctccctgcaccaaaaccatgttatatgccaaatcctcttgttaac----tatatttgaatacatt |
6994752 |
T |
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| Q |
252 |
cttcaaaataa |
262 |
Q |
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| T |
6994753 |
cttcaaaataa |
6994763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 603 - 672
Target Start/End: Complemental strand, 49085718 - 49085649
Alignment:
| Q |
603 |
aacttacaggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcat |
672 |
Q |
| |
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| T |
49085718 |
aacttacagaattatcctcatcctcctgaagtgattgcataagcgtctttctgaaaacctctaactgcat |
49085649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1103 - 1184
Target Start/End: Complemental strand, 49085276 - 49085195
Alignment:
| Q |
1103 |
ttgacacgtgttgaaagggcaatggaggtgattttgcgagccacatcgagttgctcgaaaggatcggatggtagaacttgca |
1184 |
Q |
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| T |
49085276 |
ttgacacgtgtcgatagagcaatggatgtgatcttgcgcgctacatcgagttgttcaaatggatctgacggtagtacttgca |
49085195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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