View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_15 (Length: 250)
Name: NF2909_low_15
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 37969313 - 37969074
Alignment:
| Q |
11 |
cacagaagaaatcatattgagctgatattcagaaaacggaaataaattacaaaattgaaaaagaaattatagcttttcaattaagatatcagtcaattga |
110 |
Q |
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| T |
37969313 |
cacagaagaaatcatattgagctggtattcagaaaacggaaataaattacaaaattgaaaaagaaattatagcttttcaattaagatatcagtcaattga |
37969214 |
T |
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| Q |
111 |
ttttatattgaagaggactgcagttagcccaactatactgtcattaaccctgtacaaaatcaattcaggatattatgcatcacttggcaagtattataat |
210 |
Q |
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| T |
37969213 |
ttttatattgaagaggactgcagttagcccaactatactgtcattaaccctgtacaaaatcaattcaggatattatgcatcacttggcaagtattataat |
37969114 |
T |
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| Q |
211 |
tgttaaatctataactaaaattctgtagaattttgccaat |
250 |
Q |
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| T |
37969113 |
tattaaatctataattaaaattccgtagaattttgccaat |
37969074 |
T |
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