View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_16 (Length: 250)
Name: NF2909_low_16
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4303908 - 4303666
Alignment:
| Q |
1 |
aatttccctcatccaaatcatttatgctaacaacgcgttaatttctaaagcttgaacttggattatcatatcaacaggaaattgttccgctgttcctcat |
100 |
Q |
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| T |
4303908 |
aatttccctcatccaaatgatttatgctaacaacgcgttaatttctaaagcttgaacttggattatcatatcaacaggaaattgttccgctgttcctcat |
4303809 |
T |
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| Q |
101 |
gtaaatgccacttgcccaatttcattcatttcctataatttttactgcttaattcaatcattacatgttttttcgctagctaattccaatttccaaagca |
200 |
Q |
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| T |
4303808 |
gtaaatgccacttgcccaatttcattcatttcctataatttttactgcttaattcaatcattacatgttttttcgctagctaattccaatttccgaagca |
4303709 |
T |
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| Q |
201 |
catttttatagtcttgcacacatccgacacttgctggtctctg |
243 |
Q |
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| T |
4303708 |
catttttatagtcttgcacacatccgacacttgctggtctctg |
4303666 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 27538444 - 27538396
Alignment:
| Q |
175 |
gctagctaattccaatttccaaagcacatttttatagtcttgcacacat |
223 |
Q |
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| T |
27538444 |
gctagctaattccaatttctgaagcacatttatacagtcttccacacat |
27538396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 41936222 - 41936258
Alignment:
| Q |
133 |
ctataatttttactgcttaattcaatcattacatgtt |
169 |
Q |
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| T |
41936222 |
ctataatttttactgcttaactcagtcattacatgtt |
41936258 |
T |
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